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ShapeWorks

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SCIInstitute/ShapeWorks

Files

dir Applications
- dir Applications/shapeworks
  - file Applications/shapeworks/Command.h
  - file Applications/shapeworks/Commands.h
  - file Applications/shapeworks/Executable.h
  - file Applications/shapeworks/SharedCommandData.h
dir Documentation
- dir Documentation/Doxygen
dir Libs
- dir Libs/Alignment
  - dir Libs/Alignment/Transforms
    - file Libs/Alignment/Transforms/itkAdvancedTransform.h
    - file Libs/Alignment/Transforms/itkCompactlySupportedRBFSparseKernelTransform.h
    - file Libs/Alignment/Transforms/itkKernelTransform2.h
    - file Libs/Alignment/Transforms/itkSparseKernelTransform.h
    - file Libs/Alignment/Transforms/itkThinPlateSplineKernelTransform2.h
  - file Libs/Alignment/Procrustes3D.h
- dir Libs/Analyze
  - file Libs/Analyze/Analyze.h
  - file Libs/Analyze/CustomSurfaceReconstructionFilter.h
  - file Libs/Analyze/ItkToVtk.h
  - file Libs/Analyze/LegacyMeshGenerator.h
    Mesh generation.
  - file Libs/Analyze/MeshCache.h
  - file Libs/Analyze/MeshGenerator.h
    Mesh generation.
  - file Libs/Analyze/MeshGroup.h
  - file Libs/Analyze/MeshManager.h
  - file Libs/Analyze/MeshWorkQueue.h
  - file Libs/Analyze/MeshWorker.h
    Worker class for parallel mesh reconstruction.
  - file Libs/Analyze/ParticleArea.h
  - file Libs/Analyze/Particles.h
  - file Libs/Analyze/QMeshWarper.h
  - file Libs/Analyze/Reconstruction.h
  - file Libs/Analyze/Shape.h
  - file Libs/Analyze/StudioEnums.h
  - file Libs/Analyze/StudioMesh.h
  - file Libs/Analyze/SurfaceReconstructor.h
    Surface Reconstruction Layer.
  - file Libs/Analyze/vtkPolyDataToImageData.h
- dir Libs/Application
  - dir Libs/Application/DeepSSM
    - file Libs/Application/DeepSSM/DeepSSMJob.h
  - dir Libs/Application/Job
    - file Libs/Application/Job/Job.h
    - file Libs/Application/Job/PythonWorker.h
  - file Libs/Application/ShapeWorksVtkOutputWindow.h
- dir Libs/Common
  - file Libs/Common/Logging.h
  - file Libs/Common/Profiling.h
  - file Libs/Common/Region.h
  - file Libs/Common/Shapeworks.h
  - file Libs/Common/ShapeworksUtils.h
- dir Libs/Groom
  - file Libs/Groom/Groom.h
  - file Libs/Groom/GroomParameters.h
- dir Libs/Image
  - file Libs/Image/Image.h
  - file Libs/Image/ImageRegistration.h
  - file Libs/Image/ImageUtils.h
  - file Libs/Image/VectorImage.h
  - file Libs/Image/itkTPGACLevelSetImageFilter.h
- dir Libs/Mesh
  - dir Libs/Mesh/PreviewMeshQC
    - file Libs/Mesh/PreviewMeshQC/FEAreaCoverage.h
    - file Libs/Mesh/PreviewMeshQC/FEAutoMesher.h
    - file Libs/Mesh/PreviewMeshQC/FECVDDecimationModifier.h
    - file Libs/Mesh/PreviewMeshQC/FECoreMesh.h
    - file Libs/Mesh/PreviewMeshQC/FEElement.h
    - file Libs/Mesh/PreviewMeshQC/FEFillHole.h
    - file Libs/Mesh/PreviewMeshQC/FEFixMesh.h
    - file Libs/Mesh/PreviewMeshQC/FEMesh.h
    - file Libs/Mesh/PreviewMeshQC/FEMeshSmoothingModifier.h
    - file Libs/Mesh/PreviewMeshQC/FENodeElementList.h
    - file Libs/Mesh/PreviewMeshQC/FENodeFaceList.h
    - file Libs/Mesh/PreviewMeshQC/FENodeNodeList.h
    - file Libs/Mesh/PreviewMeshQC/FEVTKExport.h
    - file Libs/Mesh/PreviewMeshQC/FEVTKImport.h
    - file Libs/Mesh/PreviewMeshQC/Intersect.h
    - file Libs/Mesh/PreviewMeshQC/math3d.h
    - file Libs/Mesh/PreviewMeshQC/stdafx.h
  - file Libs/Mesh/Mesh.h
  - file Libs/Mesh/MeshComputeThickness.h
  - file Libs/Mesh/MeshUtils.h
  - file Libs/Mesh/MeshWarper.h
    Mesh warping capability.
  - file Libs/Mesh/itkMultiplyByConstantImageFilter.h
  - file Libs/Mesh/meshFIM.h
- dir Libs/Optimize
  - file Libs/Optimize/CorrespondenceMode.h
  - file Libs/Optimize/EarlyStoppingConfig.h
  - file Libs/Optimize/GradientDescentOptimizer.h
  - dir Libs/Optimize/Constraints
    - file Libs/Optimize/Constraints/Constraint.h
    - file Libs/Optimize/Constraints/ConstraintType.h
    - file Libs/Optimize/Constraints/Constraints.h
    - file Libs/Optimize/Constraints/FreeFormConstraint.h
    - file Libs/Optimize/Constraints/PlaneConstraint.h
  - dir Libs/Optimize/Container
    - file Libs/Optimize/Container/GenericContainer.h
    - file Libs/Optimize/Container/GenericContainerArray.h
    - file Libs/Optimize/Container/MeanCurvatureContainer.h
  - dir Libs/Optimize/Domain
    - file Libs/Optimize/Domain/ContourDomain.h
    - file Libs/Optimize/Domain/DomainType.h
    - file Libs/Optimize/Domain/ImageDomain.h
    - file Libs/Optimize/Domain/ImageDomainWithCurvature.h
    - file Libs/Optimize/Domain/ImageDomainWithGradN.h
    - file Libs/Optimize/Domain/ImageDomainWithGradients.h
    - file Libs/Optimize/Domain/ImplicitSurfaceDomain.h
    - file Libs/Optimize/Domain/MeshDomain.h
    - file Libs/Optimize/Domain/MeshGeoEntry.h
    - file Libs/Optimize/Domain/ParticleDomain.h
    - file Libs/Optimize/Domain/ParticleRegionDomain.h
    - file Libs/Optimize/Domain/Surface.h
  - dir Libs/Optimize/Function
    - file Libs/Optimize/Function/CorrespondenceFunction.h
    - file Libs/Optimize/Function/DisentangledCorrespondenceFunction.h
    - file Libs/Optimize/Function/DualVectorFunction.h
    - file Libs/Optimize/Function/LegacyCorrespondenceFunction.h
    - dir Libs/Optimize/Function/EarlyStop
      - file Libs/Optimize/Function/EarlyStop/EarlyStopping.h
      - file Libs/Optimize/Function/EarlyStop/MorphologicalDeviationScore.h
    - file Libs/Optimize/Function/SamplingFunction.h
    - file Libs/Optimize/Function/VectorFunction.h
  - dir Libs/Optimize/Matrix
    - file Libs/Optimize/Matrix/LegacyShapeMatrix.h
    - file Libs/Optimize/Matrix/LinearRegressionShapeMatrix.h
    - file Libs/Optimize/Matrix/MixedEffectsShapeMatrix.h
    - file Libs/Optimize/Matrix/ShapeGradientMatrix.h
    - file Libs/Optimize/Matrix/ShapeMatrix.h
  - dir Libs/Optimize/Neighborhood
    - file Libs/Optimize/Neighborhood/ParticleNeighborhood.h
    - file Libs/Optimize/Neighborhood/ParticlePointIndexPair.h
  - dir Libs/Optimize/Utils
    - file Libs/Optimize/Utils/MemoryUsage.h
    - file Libs/Optimize/Utils/ObjectReader.h
    - file Libs/Optimize/Utils/ObjectWriter.h
    - file Libs/Optimize/Utils/OptimizationVisualizer.h
    - file Libs/Optimize/Utils/ParticleGaussianModeWriter.h
    - file Libs/Optimize/Utils/ParticleGoodBadAssessment.h
  - file Libs/Optimize/Observer.h
  - file Libs/Optimize/Optimize.h
  - file Libs/Optimize/OptimizeParameterFile.h
  - file Libs/Optimize/OptimizeParameters.h
  - file Libs/Optimize/ParticleEvents.h
  - file Libs/Optimize/ParticleSystem.h
  - file Libs/Optimize/ProcrustesRegistration.h
  - file Libs/Optimize/RegistrationInitializer.h
  - file Libs/Optimize/Sampler.h
- dir Libs/Particles
  - file Libs/Particles/CorrespondenceEvaluation.h
  - file Libs/Particles/EvaluationUtil.h
  - file Libs/Particles/ParticleFile.h
  - file Libs/Particles/ParticleNormalEvaluation.h
  - file Libs/Particles/ParticleShapeStatistics.h
  - file Libs/Particles/ParticleSystemEvaluation.h
  - file Libs/Particles/ReconstructSurface.h
  - file Libs/Particles/ShapeEvaluation.h
- dir Libs/Project
  - file Libs/Project/DeepSSMParameters.h
  - file Libs/Project/ExcelProjectReader.h
  - file Libs/Project/ExcelProjectWriter.h
  - file Libs/Project/JsonProjectReader.h
  - file Libs/Project/JsonProjectWriter.h
  - file Libs/Project/Parameters.h
  - file Libs/Project/Project.h
  - file Libs/Project/ProjectReader.h
  - file Libs/Project/ProjectUtils.h
  - file Libs/Project/Subject.h
  - file Libs/Project/Variant.h
- dir Libs/Python
  - file Libs/Python/PythonAnalyze.h
  - file Libs/Python/PythonGroom.h
  - file Libs/Python/pybind_utils.h
- dir Libs/Utils
  - file Libs/Utils/EigenUtils.h
  - file Libs/Utils/PlatformUtils.h
  - file Libs/Utils/StringUtils.h
  - file Libs/Utils/Utils.h
file Module.dox
dir Studio
- dir Studio/Analysis
  - file Studio/Analysis/AnalysisTool.h
  - file Studio/Analysis/CorrespondenceQualityPanel.h
  - file Studio/Analysis/ParticleAreaPanel.h
  - file Studio/Analysis/ShapeEvaluationJob.h
  - file Studio/Analysis/ShapeScalarPanel.h
- dir Studio/Data
  - file Studio/Data/DataTool.h
  - file Studio/Data/ExportUtils.h
  - file Studio/Data/LandmarkItemDelegate.h
  - file Studio/Data/LandmarkTableModel.h
  - file Studio/Data/MeshSettings.h
  - file Studio/Data/Preferences.h
  - file Studio/Data/PreferencesWindow.h
  - file Studio/Data/SegmentationToolPanel.h
  - file Studio/Data/Session.h
  - file Studio/Data/ShapeWorksWorker.h
  - file Studio/Data/Telemetry.h
  - file Studio/Data/Worker.h
- dir Studio/DeepSSM
  - file Studio/DeepSSM/DeepSSMTool.h
- dir Studio/Groom
  - file Studio/Groom/GroomTool.h
- dir Studio/Interface
  - file Studio/Interface/CompareWidget.h
  - file Studio/Interface/CustomSlider.h
  - file Studio/Interface/ExportImageDialog.h
  - file Studio/Interface/KeyboardShortcuts.h
  - file Studio/Interface/LogWindow.h
  - file Studio/Interface/ShapeWorksStudioApp.h
  - file Studio/Interface/SplashScreen.h
  - file Studio/Interface/StatusBarWidget.h
  - file Studio/Interface/StudioLogger.h
  - file Studio/Interface/Style.h
  - file Studio/Interface/UpdateChecker.h
  - file Studio/Interface/WheelEventForwarder.h
- dir Studio/Job
  - file Studio/Job/CorrespondenceQualityJob.h
  - file Studio/Job/GroupPvalueJob.h
  - file Studio/Job/NetworkAnalysisJob.h
  - file Studio/Job/ParticleAreaJob.h
  - file Studio/Job/ParticleNormalEvaluationJob.h
  - file Studio/Job/ShapeScalarJob.h
  - file Studio/Job/StatsGroupDWDJob.h
  - file Studio/Job/StatsGroupLDAJob.h
- dir Studio/Optimize
  - file Studio/Optimize/OptimizeTool.h
  - file Studio/Optimize/QOptimize.h
- dir Studio/Resources
  - file Studio/Resources/resource.h
- dir Studio/ShapeWorksMONAI
  - file Studio/ShapeWorksMONAI/MonaiLabelJob.h
  - file Studio/ShapeWorksMONAI/MonaiLabelTool.h
  - file Studio/ShapeWorksMONAI/MonaiLabelUtils.h
- dir Studio/Utils
  - file Studio/Utils/AnalysisUtils.h
  - file Studio/Utils/ImageLabel.h
  - file Studio/Utils/StackWalker.h
  - file Studio/Utils/StudioUtils.h
  - file Studio/Utils/WindowsCrashHandler.h
- dir Studio/Visualization
  - file Studio/Visualization/ColorMap.h
  - file Studio/Visualization/ColorSchemes.h
  - file Studio/Visualization/LandmarkWidget.h
  - file Studio/Visualization/Lightbox.h
  - file Studio/Visualization/MeshSlice.h
  - file Studio/Visualization/PaintWidget.h
  - file Studio/Visualization/ParticleColors.h
  - file Studio/Visualization/PlaneWidget.h
  - file Studio/Visualization/SliceView.h
  - file Studio/Visualization/StudioHandleWidget.h
  - file Studio/Visualization/StudioImageActorPointPlacer.h
  - file Studio/Visualization/StudioInteractorStyle.h
  - file Studio/Visualization/StudioSliceInteractorStyle.h
  - file Studio/Visualization/Viewer.h
  - file Studio/Visualization/Visualizer.h

Updated on 2026-10-12 at 20:01:04 +0000