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• sample() : Eigen::AlignedBox< _Scalar, _AmbientDim >
• Sample() : itk::PSMImageDomain< T, VDimension >
• SampleGradient() : itk::PSMImageDomainWithGradients< T, VDimension >
• SampleHessianVnl() : itk::PSMImageDomainWithHessians< T, VDimension >
• SampleSize() : ParticleShapeStatistics< VDimension >
• save_project() : Project
• SaveFile() : TiXmlDocument
• scale() : Eigen::Transform< _Scalar, _Dim >
• Scaling() : Eigen::Scaling< _Scalar, _Dim >
• searchLowerIndex() : Eigen::internal::CompressedStorage< _Scalar, _Index >
• segment() : Eigen::DenseBase< Derived > , Eigen::SparseMatrixBase< Derived >
• select() : Eigen::DenseBase< Derived >
• SelfAdjointEigenSolver() : Eigen::SelfAdjointEigenSolver< _MatrixType >
• set_app() : AnalysisTool
• set_center() : Visualizer
• set_display_mode() : Visualizer
• set_id() : Shape
• set_lightbox() : Visualizer
• set_parent() : Project
• set_project() : AnalysisTool , GroomTool , OptimizeTool , Visualizer
• set_show_glyphs() : Visualizer
• set_show_surface() : Visualizer
• SetAOn() : itk::PSMTwoCostFunction< VDimension >
• SetAttribute() : TiXmlElement
• setBounds() : Eigen::internal::AmbiVector< _Scalar, _Index >
• SetBranch() : itk::PSMPointTreeNode< VDimension >
• SetCDATA() : TiXmlText
• SetCondenseWhiteSpace() : TiXmlBase
• setConstant() : Eigen::DenseBase< Derived > , Eigen::PlainObjectBase< Derived > , Eigen::TriangularView< _MatrixType, _Mode >
• SetDomain() : itk::PSMRegionNeighborhood< VDimension >
• SetDomainIndex() : itk::ParticleEventWithIndex
• SetDomainName() : itk::PSMEntropyModelFilter< TImage, TShapeMatrix >
• SetDomainsPerShape() : itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension > , itk::PSMProcrustesRegistration< VDimension > , itk::PSMRegressionShapeMatrixAttribute< T, VDimension > , itk::PSMShapeMatrixAttribute< T, VDimension >
• SetDOMNode() : itk::PSMProject
• SetDoubleAttribute() : TiXmlElement
• SetDoubleValue() : TiXmlAttribute
• setDroptol() : Eigen::IncompleteLUT< _Scalar >
• setEmpty() : Eigen::AlignedBox< _Scalar, _AmbientDim >
• setFillfactor() : Eigen::IncompleteLUT< _Scalar >
• SetFixedParameters() : itk::SparseKernelTransform< TScalarType, NDimensions >
• SetFixedParticleFlag() : itk::PSMParticleSystem< VDimension >
• SetFlatCutoff() : itk::PSMParticleEntropyFunction< TGradientNumericType, VDimension >
• setFromTriplets() : Eigen::SparseMatrix< _Scalar, _Options, _Index >
• setFromTwoVectors() : Eigen::Quaternion< _Scalar > , Eigen::QuaternionBase< Derived >
• setIdentity() : Eigen::DiagonalMatrix< _Scalar, SizeAtCompileTime, MaxSizeAtCompileTime > , Eigen::MatrixBase< Derived > , Eigen::PermutationBase< Derived > , Eigen::Quaternion< _Scalar > , Eigen::QuaternionBase< Derived > , Eigen::SparseMatrix< _Scalar, _Options, _Index > , Eigen::Transform< _Scalar, _Dim > , Eigen::TranspositionsBase< Derived >
• SetIdentity() : itk::SparseKernelTransform< TScalarType, NDimensions >
• SetImage() : itk::PSMImageDomain< T, VDimension > , itk::PSMImageDomainWithCurvature< T, VDimension > , itk::PSMImageDomainWithGradients< T, VDimension > , itk::PSMImageDomainWithHessians< T, VDimension >
• SetIndent() : TiXmlPrinter
• setInfos() : Eigen::internal::MappedSuperNodalMatrix< _Scalar, _Index >
• SetInput() : itk::ImageToVTKImageFilter< TInputImage > , itk::ParticlePositionWriter< VDimension > , itk::PSMEntropyModelFilter< TImage, TShapeMatrix > , itk::VTKImageToImageFilter< TOutputImage >
• SetInputCorrespondencePoints() : itk::PSMEntropyModelFilter< TImage, TShapeMatrix >
• SetIntercept() : itk::PSMRegressionShapeMatrixAttribute< T, VDimension >
• SetIntValue() : TiXmlAttribute
• setLength() : Eigen::HouseholderSequence< VectorsType, CoeffsType, Side >
• SetLineBreak() : TiXmlPrinter
• setLinSpaced() : Eigen::DenseBase< Derived >
• SetLowerBound() : itk::PSMPointTreeNode< VDimension >
• SetMatrix() : itk::PSMShapeMatrixAttribute< T, VDimension >
• SetMaximumNeighborhoodRadius() : itk::PSMParticleEntropyFunction< TGradientNumericType, VDimension >
• SetMaximumNumberOfIterations() : itk::PSMEntropyModelFilter< TImage, TShapeMatrix >
• setMaxIterations() : Eigen::ComplexEigenSolver< _MatrixType > , Eigen::ComplexSchur< _MatrixType > , Eigen::EigenSolver< _MatrixType > , Eigen::GeneralizedEigenSolver< _MatrixType > , Eigen::IterativeSolverBase< Derived > , Eigen::RealQZ< _MatrixType > , Eigen::RealSchur< _MatrixType >
• SetMinimumNeighborhoodRadius() : itk::PSMParticleEntropyFunction< TGradientNumericType, VDimension >
• SetMinimumVariance() : itk::PSMShapeEntropyFunction< VDimension >
• SetMinimumVarianceDecay() : itk::PSMShapeEntropyFunction< VDimension >
• SetName() : TiXmlAttribute
• SetNeighborhood() : itk::PSMParticleSystem< VDimension >
• SetNeighborhoodToSigmaRatio() : itk::PSMParticleEntropyFunction< TGradientNumericType, VDimension >
• setNull() : Eigen::AlignedBox< _Scalar, _AmbientDim >
• SetNumberOfDomains() : itk::PSMParticleSystem< VDimension >
• SetNumberOfScales() : itk::PSMEntropyModelFilter< TImage, TShapeMatrix >
• SetNumIndividuals() : itk::PSMEntropyMixedEffectsModelFilter< TImage, TShapeMatrix >
• setOnes() : Eigen::DenseBase< Derived > , Eigen::PlainObjectBase< Derived > , Eigen::TriangularView< _MatrixType, _Mode >
• SetParameters() : itk::SparseKernelTransform< TScalarType, NDimensions >
• SetParticleSystem() : itk::PSMCostFunction< VDimension > , itk::PSMTwoCostFunction< VDimension >
• setPivotThreshold() : Eigen::SparseLU< _MatrixType, _OrderingType > , Eigen::SparseQR< _MatrixType, _OrderingType > , Eigen::SPQR< _MatrixType >
• SetPointSetA() : itk::PSMRBFCorrespondenceInterpolator< VDimension >
• SetPointSetB() : itk::PSMRBFCorrespondenceInterpolator< VDimension >
• SetPositionIndex() : itk::ParticleEventWithIndex
• SetProcrustesInterval() : itk::PSMProcrustesRegistration< VDimension >
• SetPSMFilterParameters() : itk::PSMCommandLineClass< VDimension >
• SetPSMParticleSystem() : itk::PSMProcrustesRegistration< VDimension >
• setRandom() : Eigen::DenseBase< Derived > , Eigen::PlainObjectBase< Derived >
• SetRecomputeCovarianceInterval() : itk::PSMShapeEntropyFunction< VDimension >
• SetRegion() : itk::PSMRegionDomain< VDimension >
• SetRegressionInterval() : itk::PSMRegressionShapeMatrixAttribute< T, VDimension >
• SetRegularizationConstant() : itk::PSMEntropyModelFilter< TImage, TShapeMatrix >
• SetRegularizationInitial() : itk::PSMEntropyModelFilter< TImage, TShapeMatrix >
• SetRelativeEnergyScaling() : itk::PSMTwoCostFunction< VDimension >
• SetShapeEntropyWeighting() : itk::PSMEntropyModelFilter< TImage, TShapeMatrix >
• SetShapeMatrix() : itk::PSMShapeEntropyFunction< VDimension >
• setShift() : Eigen::CholmodBase< _MatrixType, _UpLo, Derived > , Eigen::HouseholderSequence< VectorsType, CoeffsType, Side > , Eigen::SimplicialCholeskyBase< Derived >
• SetSlope() : itk::PSMRegressionShapeMatrixAttribute< T, VDimension >
• SetSourceLandmarks() : itk::SparseKernelTransform< TScalarType, NDimensions >
• SetSpatialSigmaCache() : itk::PSMParticleEntropyFunction< TGradientNumericType, VDimension >
• setSPQROrdering() : Eigen::SPQR< _MatrixType >
• SetStiffness() : itk::SparseKernelTransform< TScalarType, NDimensions >
• SetStreamPrinting() : TiXmlPrinter
• SetTabSize() : TiXmlDocument
• SetTargetLandmarks() : itk::SparseKernelTransform< TScalarType, NDimensions >
• setThreshold() : Eigen::ColPivHouseholderQR< _MatrixType > , Eigen::FullPivHouseholderQR< _MatrixType > , Eigen::FullPivLU< _MatrixType >
• SetTimePointsPerIndividual() : itk::PSMEntropyMixedEffectsModelFilter< TImage, TShapeMatrix >
• setTolerance() : Eigen::IterativeSolverBase< Derived >
• SetTolerance() : itk::PSMEntropyModelFilter< TImage, TShapeMatrix >
• setTrans() : Eigen::HouseholderSequence< VectorsType, CoeffsType, Side >
• SetTransform() : itk::PSMParticleSystem< VDimension >
• SetType() : FEElement
• SetUserData() : TiXmlBase
• SetValue() : TiXmlAttribute , TiXmlNode
• SetVariables() : itk::PSMEntropyMixedEffectsModelFilter< TImage, TShapeMatrix > , itk::PSMEntropyRegressionModelFilter< TImage, TShapeMatrix > , itk::PSMRegressionShapeMatrixAttribute< T, VDimension >
• setZero() : Eigen::DenseBase< Derived > , Eigen::DiagonalMatrix< _Scalar, SizeAtCompileTime, MaxSizeAtCompileTime > , Eigen::internal::AmbiVector< _Scalar, _Index > , Eigen::LDLT< _MatrixType, _UpLo > , Eigen::PlainObjectBase< Derived > , Eigen::SparseMatrix< _Scalar, _Options, _Index > , Eigen::TriangularView< _MatrixType, _Mode >
• ShapeEntropyFunction() : itk::PSMEntropyModelFilter< TImage, TShapeMatrix >
• ShapeMatrix() : ParticleShapeStatistics< VDimension >
• shear() : Eigen::Transform< _Scalar, _Dim >
• shift() : Eigen::HouseholderSequence< VectorsType, CoeffsType, Side >
• signDeterminant() : Eigen::SparseLU< _MatrixType, _OrderingType >
• signedDistance() : Eigen::Hyperplane< _Scalar, _AmbientDim >
• SimpleLinearRegression() : ParticleShapeStatistics< VDimension >
• SimplicialCholeskyBase() : Eigen::SimplicialCholeskyBase< Derived >
• SimplicialLDLT() : Eigen::SimplicialLDLT< _MatrixType, _UpLo >
• SimplicialLLT() : Eigen::SimplicialLLT< _MatrixType, _UpLo >
• sin() : Eigen::ArrayBase< Derived >
• singularValues() : Eigen::JacobiSVD< _MatrixType, QRPreconditioner >
• size() : Eigen::EigenBase< Derived > , Eigen::PermutationBase< Derived > , Eigen::SparseMatrixBase< Derived > , Eigen::TranspositionsBase< Derived >
• Size() : TiXmlPrinter
• sizes() : Eigen::AlignedBox< _Scalar, _AmbientDim >
• slerp() : Eigen::Quaternion< _Scalar > , Eigen::QuaternionBase< Derived > , Eigen::Rotation2D< _Scalar >
• solve() : Eigen::CholmodBase< _MatrixType, _UpLo, Derived > , Eigen::ColPivHouseholderQR< _MatrixType > , Eigen::FullPivHouseholderQR< _MatrixType > , Eigen::FullPivLU< _MatrixType > , Eigen::HouseholderQR< _MatrixType > , Eigen::IterativeSolverBase< Derived > , Eigen::JacobiSVD< _MatrixType, QRPreconditioner > , Eigen::LDLT< _MatrixType, _UpLo > , Eigen::LLT< _MatrixType, _UpLo > , Eigen::PardisoImpl< Derived > , Eigen::PartialPivLU< _MatrixType > , Eigen::PastixBase< Derived > , Eigen::SimplicialCholeskyBase< Derived > , Eigen::SparseLU< _MatrixType, _OrderingType > , Eigen::SparseQR< _MatrixType, _OrderingType > , Eigen::SPQR< _MatrixType > , Eigen::SuperLUBase< _MatrixType, Derived > , Eigen::SVD< MatrixType > , Eigen::TriangularView< _MatrixType, _Mode > , Eigen::UmfPackLU< _MatrixType >
• solveInPlace() : Eigen::internal::MappedSuperNodalMatrix< _Scalar, _Index > , Eigen::TriangularView< _MatrixType, _Mode >
• solveWithGuess() : Eigen::BiCGSTAB< _MatrixType, _Preconditioner > , Eigen::ConjugateGradient< _MatrixType, _UpLo, _Preconditioner >
• SparseMatrix() : Eigen::SparseMatrix< _Scalar, _Options, _Index >
• SplitAllParticles() : itk::PSMParticleSystem< VDimension >
• sqrt() : Eigen::ArrayBase< Derived >
• square() : Eigen::ArrayBase< Derived >
• squaredDistance() : Eigen::ParametrizedLine< _Scalar, _AmbientDim >
• squaredExteriorDistance() : Eigen::AlignedBox< _Scalar, _AmbientDim >
• squaredNorm() : Eigen::MatrixBase< Derived > , Eigen::Quaternion< _Scalar > , Eigen::QuaternionBase< Derived > , Eigen::VectorwiseOp< ExpressionType, Direction >
• stableNorm() : Eigen::MatrixBase< Derived > , Eigen::VectorwiseOp< ExpressionType, Direction >
• Standalone() : TiXmlDeclaration
• StartElement() : itk::PSMDOMNodeXMLReader
• StartOptimization() : itk::PSMGradientDescentOptimizer< TGradientNumericType, VDimension >
• StopOptimization() : itk::PSMGradientDescentOptimizer< TGradientNumericType, VDimension >
• Stream() : itk::PSMProject
• StreamChildren() : itk::PSMProject
• Stride() : Eigen::Stride< _OuterStrideAtCompileTime, _InnerStrideAtCompileTime >
• subDiagonal() : Eigen::Tridiagonalization< _MatrixType >
• subs() : Eigen::internal::BandMatrix< _Scalar, Rows, Cols, Supers, Subs, Options > , Eigen::internal::BandMatrixBase< Derived > , Eigen::internal::BandMatrixWrapper< _CoefficientsType, _Rows, _Cols, _Supers, _Subs, _Options >
• sum() : Eigen::DenseBase< Derived > , Eigen::SparseMatrix< _Scalar, _Options, _Index > , Eigen::SparseVector< _Scalar, _Options, _Index > , Eigen::VectorwiseOp< ExpressionType, Direction >
• supers() : Eigen::internal::BandMatrix< _Scalar, Rows, Cols, Supers, Subs, Options > , Eigen::internal::BandMatrixBase< Derived > , Eigen::internal::BandMatrixWrapper< _CoefficientsType, _Rows, _Cols, _Supers, _Subs, _Options >
• supToCol() : Eigen::internal::MappedSuperNodalMatrix< _Scalar, _Index >
• swap() : Eigen::Array< _Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols > , Eigen::DenseBase< Derived > , Eigen::SparseMatrix< _Scalar, _Options, _Index > , Eigen::SparseVector< _Scalar, _Options, _Index >
• SynchronizePositions() : itk::PSMParticleSystem< VDimension >