Inheritance diagram for itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >:

Collaboration diagram for itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >:

Public Types
typedef T	DataType

typedef PSMMixedEffectsShapeMatrixAttribute	Self

typedef PSMShapeMatrixAttribute< T, VDimension >	Superclass

typedef SmartPointer< Self >	Pointer

typedef SmartPointer< const Self >	ConstPointer

typedef WeakPointer< const Self >	ConstWeakPointer

Public Types inherited from itk::PSMShapeMatrixAttribute< T, VDimension >
typedef T	DataType

typedef PSMShapeMatrixAttribute	Self

typedef PSMAttribute< VDimension >	Superclass

typedef SmartPointer< Self >	Pointer

typedef SmartPointer< const Self >	ConstPointer

typedef WeakPointer< const Self >	ConstWeakPointer

Public Types inherited from itk::PSMAttribute< VDimension >
typedef PSMAttribute	Self

typedef DataObject	Superclass

typedef SmartPointer< Self >	Pointer

typedef SmartPointer< const Self >	ConstPointer

typedef WeakPointer< const Self >	ConstWeakPointer

Public Member Functions
	itkNewMacro (Self)

	itkTypeMacro (PSMMixedEffectsShapeMatrixAttribute, PSMShapeMatrixAttribute)

vnl_vector< double >	ComputeMean (double k) const

void	ResizeParameters (unsigned int n)

virtual void	ResizeMeanMatrix (int rs, int cs)

void	ResizeExplanatory (unsigned int n)

virtual void	DomainAddEventCallback (Object *, const EventObject &e)

virtual void	PositionAddEventCallback (Object *o, const EventObject &e)

virtual void	PositionSetEventCallback (Object *o, const EventObject &e)

virtual void	PositionRemoveEventCallback (Object *, const EventObject &)

void	SetDomainsPerShape (int i)

int	GetDomainsPerShape () const

void	SetTimePointsPerIndividual (const vnl_vector< int > &v)

vnl_vector< int > &	GetTimePointsPerIndividual () const

vnl_vector< int > &	GetTimePointsPerIndividual ()

void	SetNumIndividuals (int i)

int	GetNumIndividuals ()

void	SetExplanatory (std::vector< double > v)

void	SetExplanatory (unsigned int i, double q)

const double &	GetExplanatory (unsigned int i) const

double &	GetExplanatory (unsigned int i)

const vnl_vector< double > &	GetSlope () const

const vnl_vector< double > &	GetIntercept () const

const vnl_matrix< double > &	GetSlopeRandom () const

const vnl_matrix< double > &	GetInterceptRandom () const

void	SetSlope (const std::vector< double > &v)

void	SetIntercept (const std::vector< double > &v)

void	Initialize ()

virtual void	BeforeIteration ()

void	SetRegressionInterval (int i)

int	GetRegressionInterval () const

virtual void	UpdateMeanMatrix ()

virtual void	EstimateParameters ()

Public Member Functions inherited from itk::PSMShapeMatrixAttribute< T, VDimension >
	itkNewMacro (Self)

	itkTypeMacro (PSMShapeMatrixAttribute, PSMAttribute)

virtual void	ResizeMatrix (int, int)

void	SetDomainsPerShape (int i)

int	GetDomainsPerShape () const

virtual void	AfterIteration ()

virtual void	SetMatrix (const vnl_matrix< T > &m)

Public Member Functions inherited from itk::PSMAttribute< VDimension >
	itkNewMacro (Self)

	itkTypeMacro (PSMAttribute, DataObject)

virtual void	EventCallback (Object *, const EventObject &)

virtual void	EventWithIndexCallback (Object *, const EventObject &)

virtual void	TransformSetEventCallback (Object *, const EventObject &)

virtual void	PrefixTransformSetEventCallback (Object *, const EventObject &)

virtual void	NeighborhoodSetEventCallback (Object *, const EventObject &)

Protected Member Functions
void	PrintSelf (std::ostream &os, Indent indent) const

Protected Member Functions inherited from itk::PSMShapeMatrixAttribute< T, VDimension >
void	PrintSelf (std::ostream &os, Indent indent) const

Protected Member Functions inherited from itk::PSMAttribute< VDimension >
void	PrintSelf (std::ostream &os, Indent indent) const

Additional Inherited Members
Public Attributes inherited from itk::PSMAttribute< VDimension >
DefinedCallbacksStruct	m_DefinedCallbacks

Protected Attributes inherited from itk::PSMShapeMatrixAttribute< T, VDimension >
int	m_DomainsPerShape

Detailed Description

template<class T, unsigned int VDimension>
class itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >

Definition at line 35 of file itkPSMMixedEffectsShapeMatrixAttribute.h.

Member Typedef Documentation

template<class T , unsigned int VDimension>

typedef T itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >::DataType

Standard class typedefs

Definition at line 40 of file itkPSMMixedEffectsShapeMatrixAttribute.h.

Member Function Documentation

template<class T , unsigned int VDimension>

virtual void itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >::BeforeIteration ( )

inlinevirtual

Method defining actions before the iteration of a solver that is using this class (via a PSM function object).

Reimplemented from itk::PSMShapeMatrixAttribute< T, VDimension >.

Definition at line 305 of file itkPSMMixedEffectsShapeMatrixAttribute.h.

    {
      m_UpdateCounter ++;
      if (m_UpdateCounter >= m_RegressionInterval)
      {
        m_UpdateCounter = 0;
        this->EstimateParameters();
        this->UpdateMeanMatrix();
      }
    }

template<class T , unsigned int VDimension>

virtual void itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >::DomainAddEventCallback	(	Object *	,
		const EventObject &	e
	)

inlinevirtual

Callbacks that may be defined by a subclass. If a subclass defines one of these callback methods, the corresponding flag in m_DefinedCallbacks should be set to true so that the PSMParticleSystem will know to register the appropriate event with this method.

Reimplemented from itk::PSMShapeMatrixAttribute< T, VDimension >.

Definition at line 115 of file itkPSMMixedEffectsShapeMatrixAttribute.h.

    {
      const itk::ParticleDomainAddEvent &event
        = dynamic_cast<const itk::ParticleDomainAddEvent &>(e);
      unsigned int d = event.GetDomainIndex();
 
      if ( d % this->m_DomainsPerShape  == 0 )
      {
        this->ResizeMatrix(this->rows(), this->cols()+1);
        this->ResizeMeanMatrix(this->rows(), this->cols()+1);
        this->ResizeExplanatory(this->cols());
      }    
    }

template<class T , unsigned int VDimension>

void itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >::Initialize ( )

inlinevirtual

Perform any initialization steps. This can be overridden by subclasses.

Reimplemented from itk::PSMShapeMatrixAttribute< T, VDimension >.

Definition at line 295 of file itkPSMMixedEffectsShapeMatrixAttribute.h.

    {
      m_Intercept.fill(0.0);
      m_Slope.fill(0.0);
      m_MeanMatrix.fill(0.0);
 
      m_SlopeRand.fill(0.0);
      m_InterceptRand.fill(0.0);    
    }

template<class T , unsigned int VDimension>

itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >::itkNewMacro ( Self )

Method for creation through the object factory.

template<class T , unsigned int VDimension>

itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >::itkTypeMacro	(	PSMMixedEffectsShapeMatrixAttribute< T, VDimension >	,
		PSMShapeMatrixAttribute
	)

Run-time type information (and related methods).

template<class T , unsigned int VDimension>

virtual void itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >::PositionAddEventCallback	(	Object *	o,
		const EventObject &	e
	)

inlinevirtual

Callback defining actions when a position is added to a ParticleSystem. This method will likely be called from itkParticleSystem with the event ParticleAddEvent.

Reimplemented from itk::PSMShapeMatrixAttribute< T, VDimension >.

Definition at line 129 of file itkPSMMixedEffectsShapeMatrixAttribute.h.

    {
      const itk::ParticlePositionAddEvent &event
        = dynamic_cast<const itk::ParticlePositionAddEvent &>(e);
      const itk::PSMParticleSystem<VDimension> *ps
        = dynamic_cast<const itk::PSMParticleSystem<VDimension> *>(o);
      const int d = event.GetDomainIndex();
      const unsigned int idx = event.GetPositionIndex();
      const typename itk::PSMParticleSystem<VDimension>::PointType pos
        = ps->GetTransformedPosition(idx, d);
 
      const unsigned int PointsPerDomain = ps ->GetNumberOfParticles(d);
 
      // Make sure we have enough rows.
      if ( (ps->GetNumberOfParticles(d) * VDimension * this->m_DomainsPerShape) > this->rows() )
      {
        this->ResizeParameters(PointsPerDomain * VDimension * this->m_DomainsPerShape);
        this->ResizeMatrix(PointsPerDomain * VDimension * this->m_DomainsPerShape,
                  this->cols());
        this->ResizeMeanMatrix(PointsPerDomain * VDimension * this->m_DomainsPerShape,
                      this->cols());
      }
 
      // CANNOT ADD POSITION INFO UNTIL ALL POINTS PER DOMAIN IS KNOWN
      // Add position info to the matrix
      unsigned int k = ((d % this->m_DomainsPerShape) * PointsPerDomain * VDimension)
        + (idx * VDimension);
      for (unsigned int i = 0; i < VDimension; i++)
      {
        this->operator()(i+k, d / this->m_DomainsPerShape) = pos[i];
      }
    }

template<class T , unsigned int VDimension>

virtual void itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >::PositionRemoveEventCallback	(	Object *	,
		const EventObject &
	)

inlinevirtual

Reserved for future implementation.

Reimplemented from itk::PSMShapeMatrixAttribute< T, VDimension >.

Definition at line 185 of file itkPSMMixedEffectsShapeMatrixAttribute.h.

    {
      // NEED TO IMPLEMENT THIS
    }

template<class T , unsigned int VDimension>

virtual void itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >::PositionSetEventCallback	(	Object *	o,
		const EventObject &	e
	)

inlinevirtual

Callback for defining actions when a position value is set – usually from ParticleSystem.

Reimplemented from itk::PSMShapeMatrixAttribute< T, VDimension >.

Definition at line 162 of file itkPSMMixedEffectsShapeMatrixAttribute.h.

    {
      const itk::ParticlePositionSetEvent &event
        = dynamic_cast <const itk::ParticlePositionSetEvent &>(e);
 
      const itk::PSMParticleSystem<VDimension> *ps
        = dynamic_cast<const itk::PSMParticleSystem<VDimension> *>(o);
      const int d = event.GetDomainIndex();
      const unsigned int idx = event.GetPositionIndex();
      const typename itk::PSMParticleSystem<VDimension>::PointType pos = ps->GetTransformedPosition(idx, d);
      const unsigned int PointsPerDomain = ps ->GetNumberOfParticles(d);
 
      // Modify matrix info
      unsigned int k = ((d % this->m_DomainsPerShape) * PointsPerDomain * VDimension)
        + (idx * VDimension);    
 
      for (unsigned int i = 0; i < VDimension; i++)
      {
        this->operator()(i+k, d / this->m_DomainsPerShape) =
       pos[i] - m_MeanMatrix(i+k, d/ this->m_DomainsPerShape);
      }
    }

template<class T , unsigned int VDimension>

void itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >::SetDomainsPerShape ( int i )

inline

Set/Get the number of domains per shape. This can only be safely done before shapes are initialized with points!

Definition at line 192 of file itkPSMMixedEffectsShapeMatrixAttribute.h.

    { 
      this->m_DomainsPerShape = i;
    }

The documentation for this class was generated from the following files:

C:/Users/Brig/Documents/ShapeWorksStudio/src/ParticleShapeworks/include/itkPSMMixedEffectsShapeMatrixAttribute.h
C:/Users/Brig/Documents/ShapeWorksStudio/src/ParticleShapeworks/include/itkPSMMixedEffectsShapeMatrixAttribute.hxx

Public Types

Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

template<class T, unsigned int VDimension> class itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >

Member Typedef Documentation

Member Function Documentation

template<class T, unsigned int VDimension>
class itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >