Each column describes a shape. A shape may be composed of m_DomainsPerShape domains (default 1). In this implementation, all domains must have the same number of particles. More...

#include <itkPSMShapeMatrixAttribute.h>

Inheritance diagram for itk::PSMShapeMatrixAttribute< T, VDimension >:

Collaboration diagram for itk::PSMShapeMatrixAttribute< T, VDimension >:

Public Types
typedef T	DataType

typedef PSMShapeMatrixAttribute	Self

typedef PSMAttribute< VDimension >	Superclass

typedef SmartPointer< Self >	Pointer

typedef SmartPointer< const Self >	ConstPointer

typedef WeakPointer< const Self >	ConstWeakPointer

Public Types inherited from itk::PSMAttribute< VDimension >
typedef PSMAttribute	Self

typedef DataObject	Superclass

typedef SmartPointer< Self >	Pointer

typedef SmartPointer< const Self >	ConstPointer

typedef WeakPointer< const Self >	ConstWeakPointer

Public Member Functions
	itkNewMacro (Self)

	itkTypeMacro (PSMShapeMatrixAttribute, PSMAttribute)

virtual void	Initialize ()

virtual void	DomainAddEventCallback (Object *, const EventObject &e)

virtual void	ResizeMatrix (int, int)

virtual void	PositionAddEventCallback (Object *o, const EventObject &e)

virtual void	PositionSetEventCallback (Object *o, const EventObject &e)

virtual void	PositionRemoveEventCallback (Object *, const EventObject &)

void	SetDomainsPerShape (int i)

int	GetDomainsPerShape () const

virtual void	BeforeIteration ()

virtual void	AfterIteration ()

virtual void	SetMatrix (const vnl_matrix< T > &m)

Public Member Functions inherited from itk::PSMAttribute< VDimension >
	itkNewMacro (Self)

	itkTypeMacro (PSMAttribute, DataObject)

virtual void	EventCallback (Object *, const EventObject &)

virtual void	EventWithIndexCallback (Object *, const EventObject &)

virtual void	TransformSetEventCallback (Object *, const EventObject &)

virtual void	PrefixTransformSetEventCallback (Object *, const EventObject &)

virtual void	NeighborhoodSetEventCallback (Object *, const EventObject &)

Protected Member Functions
void	PrintSelf (std::ostream &os, Indent indent) const

Protected Member Functions inherited from itk::PSMAttribute< VDimension >
void	PrintSelf (std::ostream &os, Indent indent) const

Protected Attributes
int	m_DomainsPerShape

Additional Inherited Members
Public Attributes inherited from itk::PSMAttribute< VDimension >
DefinedCallbacksStruct	m_DefinedCallbacks

Detailed Description

template<class T, unsigned int VDimension>
class itk::PSMShapeMatrixAttribute< T, VDimension >

Each column describes a shape. A shape may be composed of m_DomainsPerShape domains (default 1). In this implementation, all domains must have the same number of particles.

This class defines a shape matrix. Each of the columns in the matrix is a point-based representation of a different shape.

Author: Josh Cates

Definition at line 45 of file itkPSMShapeMatrixAttribute.h.

Member Typedef Documentation

template<class T, unsigned int VDimension>

typedef T itk::PSMShapeMatrixAttribute< T, VDimension >::DataType

Standard class typedefs

Definition at line 50 of file itkPSMShapeMatrixAttribute.h.

Member Function Documentation

template<class T, unsigned int VDimension>

virtual void itk::PSMShapeMatrixAttribute< T, VDimension >::AfterIteration ( )

inlinevirtual

Method defining actions after the iteration of a solver that is using this class (via a PSM function object).

Definition at line 103 of file itkPSMShapeMatrixAttribute.h.

103 {}

template<class T, unsigned int VDimension>

virtual void itk::PSMShapeMatrixAttribute< T, VDimension >::BeforeIteration ( )

inlinevirtual

Method defining actions before the iteration of a solver that is using this class (via a PSM function object).

Reimplemented in itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >, and itk::PSMRegressionShapeMatrixAttribute< T, VDimension >.

Definition at line 99 of file itkPSMShapeMatrixAttribute.h.

99 {}

template<class T , unsigned int VDimension>

void itk::PSMShapeMatrixAttribute< T, VDimension >::DomainAddEventCallback	(	Object *	,
		const EventObject &	e
	)

virtual

Callbacks that may be defined by a subclass. If a subclass defines one of these callback methods, the corresponding flag in m_DefinedCallbacks should be set to true so that the PSMParticleSystem will know to register the appropriate event with this method.

Reimplemented from itk::PSMAttribute< VDimension >.

Reimplemented in itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >, and itk::PSMRegressionShapeMatrixAttribute< T, VDimension >.

Definition at line 26 of file itkPSMShapeMatrixAttribute.hxx.

 {
   const ParticleDomainAddEvent &event = dynamic_cast<const ParticleDomainAddEvent &>(e);
   unsigned int d = event.GetDomainIndex();
   
   if ( d % m_DomainsPerShape  == 0 )
     {
       this->ResizeMatrix(this->rows(), this->cols()+1);
     }
 }

template<class T, unsigned int VDimension>

virtual void itk::PSMShapeMatrixAttribute< T, VDimension >::Initialize ( )

inlinevirtual

Perform any initialization steps. This can be overridden by subclasses.

Reimplemented in itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >, and itk::PSMRegressionShapeMatrixAttribute< T, VDimension >.

Definition at line 64 of file itkPSMShapeMatrixAttribute.h.

64 {};

template<class T, unsigned int VDimension>

itk::PSMShapeMatrixAttribute< T, VDimension >::itkNewMacro ( Self )

Method for creation through the object factory.

template<class T, unsigned int VDimension>

itk::PSMShapeMatrixAttribute< T, VDimension >::itkTypeMacro	(	PSMShapeMatrixAttribute< T, VDimension >	,
		PSMAttribute
	)

Run-time type information (and related methods).

template<class T , unsigned int VDimension>

void itk::PSMShapeMatrixAttribute< T, VDimension >::PositionAddEventCallback	(	Object *	o,
		const EventObject &	e
	)

virtual

Callback defining actions when a position is added to a ParticleSystem. This method will likely be called from itkParticleSystem with the event ParticleAddEvent.

Reimplemented from itk::PSMAttribute< VDimension >.

Reimplemented in itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >, and itk::PSMRegressionShapeMatrixAttribute< T, VDimension >.

Definition at line 56 of file itkPSMShapeMatrixAttribute.hxx.

 {
   const ParticlePositionAddEvent &event = dynamic_cast<const ParticlePositionAddEvent &>(e);
   const PSMParticleSystem<VDimension> *ps= dynamic_cast<const PSMParticleSystem<VDimension> *>(o);
   const int d = event.GetDomainIndex();
   const unsigned int idx = event.GetPositionIndex();
   const typename PSMParticleSystem<VDimension>::PointType pos = ps->GetTransformedPosition(idx, d);
   
   const unsigned int PointsPerDomain = ps ->GetNumberOfParticles(d);
   
   // Make sure we have enough rows.
   if ((ps->GetNumberOfParticles(d) * VDimension * m_DomainsPerShape) > this->rows())
     {
       this->ResizeMatrix(PointsPerDomain * VDimension * m_DomainsPerShape, this->cols());
     }
 
   // CANNOT ADD POSITION INFO UNTIL ALL POINTS PER DOMAIN IS KNOWN
   // Add position info to the matrix
   unsigned int k = ((d % m_DomainsPerShape) * PointsPerDomain * VDimension)
     + (idx * VDimension);
   for (unsigned int i = 0; i < VDimension; i++)
     {
       this->operator()(i+k, d / m_DomainsPerShape) = pos[i];
     }
 }

template<class T, unsigned int VDimension>

virtual void itk::PSMShapeMatrixAttribute< T, VDimension >::PositionRemoveEventCallback	(	Object *	,
		const EventObject &
	)

inlinevirtual

Reserved for future implementation.

Reimplemented from itk::PSMAttribute< VDimension >.

Reimplemented in itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >, and itk::PSMRegressionShapeMatrixAttribute< T, VDimension >.

Definition at line 85 of file itkPSMShapeMatrixAttribute.h.

   {
     itkExceptionMacro("This Attribute class does not support particle position removal.");
   }

template<class T , unsigned int VDimension>

void itk::PSMShapeMatrixAttribute< T, VDimension >::PositionSetEventCallback	(	Object *	o,
		const EventObject &	e
	)

virtual

Callback for defining actions when a position value is set – usually from ParticleSystem.

Reimplemented from itk::PSMAttribute< VDimension >.

Reimplemented in itk::PSMMixedEffectsShapeMatrixAttribute< T, VDimension >, and itk::PSMRegressionShapeMatrixAttribute< T, VDimension >.

Definition at line 83 of file itkPSMShapeMatrixAttribute.hxx.

 {
   const ParticlePositionSetEvent &event = dynamic_cast<const ParticlePositionSetEvent &>(e);
   const PSMParticleSystem<VDimension> *ps= dynamic_cast<const PSMParticleSystem<VDimension> *>(o);
   const int d = event.GetDomainIndex();
   const unsigned int idx = event.GetPositionIndex();
   const typename PSMParticleSystem<VDimension>::PointType pos = ps->GetTransformedPosition(idx, d);
   const unsigned int PointsPerDomain = ps ->GetNumberOfParticles(d);
   
   // Modify matrix info
   //    unsigned int k = VDimension * idx;
   unsigned int k = ((d % m_DomainsPerShape) * PointsPerDomain * VDimension)
     + (idx * VDimension);
   for (unsigned int i = 0; i < VDimension; i++)
     {
       this->operator()(i+k, d / m_DomainsPerShape) = pos[i];
     }
 }

template<class T , unsigned int VDimension>

void itk::PSMShapeMatrixAttribute< T, VDimension >::ResizeMatrix	(	int	rs,
		int	cs
	)

virtual

Resize the existing matrix to a given size.

Definition at line 38 of file itkPSMShapeMatrixAttribute.hxx.

 {
   vnl_matrix<T> tmp(*this); // copy existing  matrix
   
   // Create new column (shape)
   this->set_size(rs, cs);
   
   // Copy old data into new matrix.
   for (unsigned int c = 0; c < tmp.cols(); c++)
     {
       for (unsigned int r = 0; r < tmp.rows(); r++)
         {
           this->operator()(r,c) = tmp(r,c);
         }
     } 
 }

template<class T, unsigned int VDimension>

void itk::PSMShapeMatrixAttribute< T, VDimension >::SetDomainsPerShape ( int i )

inline

Set/Get the number of domains per shape. This can only be safely done before shapes are initialized with points!

Definition at line 92 of file itkPSMShapeMatrixAttribute.h.

93 { m_DomainsPerShape = i; }

template<class T, unsigned int VDimension>

virtual void itk::PSMShapeMatrixAttribute< T, VDimension >::SetMatrix ( const vnl_matrix< T > & m )

inlinevirtual

Directly supply the matrix data.

Definition at line 106 of file itkPSMShapeMatrixAttribute.h.

   {
     vnl_matrix<T>::operator=(m);
   }

The documentation for this class was generated from the following files:

C:/Users/Brig/Documents/ShapeWorksStudio/src/ParticleShapeworks/include/itkPSMShapeMatrixAttribute.h
C:/Users/Brig/Documents/ShapeWorksStudio/src/ParticleShapeworks/include/itkPSMShapeMatrixAttribute.hxx

Public Types

Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

template<class T, unsigned int VDimension> class itk::PSMShapeMatrixAttribute< T, VDimension >

Member Typedef Documentation

Member Function Documentation

template<class T, unsigned int VDimension>
class itk::PSMShapeMatrixAttribute< T, VDimension >