This class decorates the base PSMEntropyModelFilter class with some additional methods for setting explanatory variables for the regression computation and retrieving regression model paramters. More...

#include <itkPSMEntropyMixedEffectsModelFilter.h>

Inheritance diagram for itk::PSMEntropyMixedEffectsModelFilter< TImage, TShapeMatrix >:

Collaboration diagram for itk::PSMEntropyMixedEffectsModelFilter< TImage, TShapeMatrix >:

Public Types
typedef PSMEntropyMixedEffectsModelFilter	Self

typedef PSMEntropyModelFilter< TImage, TShapeMatrix >	Superclass

typedef SmartPointer< Self >	Pointer

typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::ParticleSystemType	ParticleSystemType

typedef TShapeMatrix	ShapeMatrixType

typedef Superclass::ImageType	ImageType

typedef Superclass::PointType	PointType

typedef Superclass::OptimizerType	OptimizerType

Public Types inherited from itk::PSMEntropyModelFilter< TImage, TShapeMatrix >
typedef PSMEntropyModelFilter	Self

typedef InPlaceImageFilter< TImage, TImage >	Superclass

typedef SmartPointer< Self >	Pointer

typedef SmartPointer< const Self >	ConstPointer

typedef PSMParticleSystem< Dimension >	ParticleSystemType

typedef TShapeMatrix	ShapeMatrixType

typedef ShapeMatrixType::Pointer	ShapeMatrixPointerType

typedef TImage	ImageType

typedef ImageType::PointType	PointType

typedef PSMGradientDescentOptimizer< typename ImageType::PixelType, Dimension >	OptimizerType

Public Member Functions
	itkStaticConstMacro (Dimension, unsigned int, TImage::ImageDimension)

	itkNewMacro (Self)

	itkTypeMacro (PSMEntropyMixedEffectsModelFilter, PSMEntropyModelFilter)

void	SetVariables (const std::vector< double > &v)

const std::vector< double > &	GetVariables () const

void	SetTimePointsPerIndividual (const vnl_vector< int > &v)

const vnl_vector< int > &	GetTimePointsPerIndividual () const

void	SetNumIndividuals (int n)

int	GetNumIndividuals ()

Public Member Functions inherited from itk::PSMEntropyModelFilter< TImage, TShapeMatrix >
	itkStaticConstMacro (Dimension, unsigned int, TImage::ImageDimension)

	itkNewMacro (Self)

	itkTypeMacro (PSMEntropyModelFilter, InPlaceImageFilter)

void	SetInput (const std::string &s, itk::DataObject *o)

void	SetInput (const TImage *image)

void	SetInput (unsigned int index, const TImage *image)

void	SetNumberOfScales (unsigned int n)

	itkGetMacro (NumberOfScales, unsigned int)

	itkSetMacro (CurrentScale, unsigned int)

	itkGetMacro (CurrentScale, unsigned int)

void	SetInputCorrespondencePoints (unsigned int index, const std::vector< PointType > &corr)

	itkGetObjectMacro (ParticleSystem, ParticleSystemType)

	itkGetConstObjectMacro (ParticleSystem, ParticleSystemType)

PSMParticleEntropyFunction< typename ImageType::PixelType, Dimension > *	GetParticleEntropyFunction ()

PSMShapeEntropyFunction< Dimension > *	ShapeEntropyFunction ()

	itkGetObjectMacro (Optimizer, OptimizerType)

	itkGetConstObjectMacro (Optimizer, OptimizerType)

void	SetMaximumNumberOfIterations (const std::vector< unsigned int > &n)

void	SetMaximumNumberOfIterations (unsigned int n, unsigned int i=0)

unsigned int	GetMaximumNumberOfIterations (unsigned int i=0) const

unsigned int	GetNumberOfElapsedIterations () const

	itkGetMacro (Initialized, bool)

	itkGetMacro (Initializing, bool)

	itkSetMacro (Initializing, bool)

void	SetShapeEntropyWeighting (double w)

double	GetShapeEntropyWeighting () const

const std::vector< double > &	GetShapePCAVariances () const

void	SetRegularizationInitial (const std::vector< double > &v)

void	SetRegularizationInitial (double t, unsigned int i=0)

double	GetRegularizationInitial (unsigned int i=0) const

void	SetRegularizationFinal (const std::vector< double > &v)

void	SetRegularizationFinal (double t, unsigned int i=0)

double	GetRegularizationFinal (unsigned int i=0) const

void	SetRegularizationDecaySpan (const std::vector< double > &v)

void	SetRegularizationDecaySpan (double t, unsigned int i=0)

double	GetRegularizationDecaySpan (unsigned int i=0) const

void	SetRegularizationConstant (double r)

void	SetMinimumVariance (double r)

double	GetRegularizationConstant () const

double	GetMinimumVariance () const

void	SetTolerance (const std::vector< double > &v)

void	SetTolerance (double t, unsigned int i=0)

double	GetTolerance (unsigned int i=0) const

	itkGetMacro (ShapeMatrix, ShapeMatrixPointerType)

const ShapeMatrixType *	GetShapeMatrix () const

bool	CreateSingleCorrespondence ()

void	SetDomainName (const std::string &s, unsigned int i)

unsigned int	GetDomainIndexByName (const std::string &name)

void	AddCuttingPlane (const vnl_vector_fixed< double, 3 > &x, const vnl_vector_fixed< double, 3 > &y, const vnl_vector_fixed< double, 3 > &z, unsigned int domain)

void	AddCuttingPlane (const vnl_vector_fixed< double, 3 > &x, const vnl_vector_fixed< double, 3 > &y, const vnl_vector_fixed< double, 3 > &z, const std::string &s)

Protected Member Functions
void	PrintSelf (std::ostream &os, Indent indent) const

Protected Member Functions inherited from itk::PSMEntropyModelFilter< TImage, TShapeMatrix >
void	PrintSelf (std::ostream &os, Indent indent) const

void	GenerateData ()

virtual void	AllocateDataCaches ()

virtual void	AllocateWorkingImages ()

virtual void	AllocateDomainsAndNeighborhoods ()

void	InitializeCorrespondences ()

	itkSetMacro (Initialized, bool)

void	OptimizerIterateCallback (Object *, const EventObject &)

PSMImplicitSurfaceDomain< typename ImageType::PixelType, Dimension >::Pointer &	GetDomainByName (const std::string &name)

PSMImplicitSurfaceDomain< typename ImageType::PixelType, Dimension >::Pointer &	GetDomain (unsigned int i)

Detailed Description

template<class TImage, class TShapeMatrix = PSMMixedEffectsShapeMatrixAttribute<double, TImage::ImageDimension>>
class itk::PSMEntropyMixedEffectsModelFilter< TImage, TShapeMatrix >

This class decorates the base PSMEntropyModelFilter class with some additional methods for setting explanatory variables for the regression computation and retrieving regression model paramters.

Author: Josh Cates

Definition at line 40 of file itkPSMEntropyMixedEffectsModelFilter.h.