itkPSMEntropyMixedEffectsModelFilter.h

/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef __itkPSMEntropyMixedEffectsModelFilter_h
#define __itkPSMEntropyMixedEffectsModelFilter_h

#include "itkPSMEntropyModelFilter.h"
#include "itkPSMMixedEffectsShapeMatrixAttribute.h"

namespace itk
{
  
template <class TImage, class TShapeMatrix = PSMMixedEffectsShapeMatrixAttribute<double, TImage::ImageDimension> >
class ITK_EXPORT PSMEntropyMixedEffectsModelFilter
  : public PSMEntropyModelFilter<TImage,TShapeMatrix>
{
 public:
 typedef PSMEntropyMixedEffectsModelFilter  Self;
 typedef PSMEntropyModelFilter<TImage, TShapeMatrix> Superclass;
 typedef SmartPointer<Self>   Pointer;
 typedef SmartPointer<const Self>  ConstPointer;
 
 itkStaticConstMacro(Dimension, unsigned int, TImage::ImageDimension);
 
 typedef typename Superclass::ParticleSystemType ParticleSystemType;
 
 typedef TShapeMatrix ShapeMatrixType;

 itkNewMacro(Self);
 
 itkTypeMacro(PSMEntropyMixedEffectsModelFilter, PSMEntropyModelFilter);
 
 typedef typename Superclass::ImageType ImageType;

 typedef typename Superclass::PointType PointType;

 typedef typename Superclass::OptimizerType OptimizerType;

 void SetVariables(const std::vector<double> &v)
 {
   this->GetShapeMatrix()->SetExplanatory(v);
 }
 const std::vector<double> &GetVariables() const
 {
   return this->GetShapeMatrix()->GetExplanatory();
 }

 void SetTimePointsPerIndividual(const vnl_vector<int> &v)
 {
   this->GetShapeMatrix()->SetTimePointsPerIndividual(v);
 }
 const vnl_vector<int> &GetTimePointsPerIndividual() const
 {
   return this->GetShapeMatrix()->GetTimePointsPerIndividual();
 }

 void SetNumIndividuals(int n)
 {
   this->GetShapeMatrix()->SetNumIndividuals(n);
 }
 int GetNumIndividuals()
 {
   return this->GetShapeMatrix()->GetNumIndividuals();
 }

 protected:
 PSMEntropyMixedEffectsModelFilter() {}
 virtual ~PSMEntropyMixedEffectsModelFilter() {}
 
 void PrintSelf(std::ostream& os, Indent indent) const
 {
   Superclass::PrintSelf(os, indent);
  }

private:
  PSMEntropyMixedEffectsModelFilter(const Self&); //purposely not implemented
  void operator=(const Self&);        //purposely not implemented
};

} // end namespace itk

#endif