shapeworks::Project

Representation of a project. More...

#include <Project.h>

Public Functions

	Name
	Project()
	~Project()
bool	load(const std::string & filename) Load from project file.
bool	save(const std::string & filename ="") Save to project file.
void	set_project_path(const std::string & path) Set the project path.
std::string	get_project_path() Return the project path.
std::string	get_filename() Return the filename.
void	set_filename(std::string filename) Set project filename.
std::vector< std::string >	get_headers() Return the headers of the subject sheet.
std::vector< std::string >	get_string_column(const std::string & name) const Return a column by name.
int	get_number_of_subjects() Return the number of subjects in the project.
int	get_number_of_domains_per_subject() Return the number of domains.
std::vector< std::string >	get_domain_names() Return the domain names (e.g. femur, pelvis, etc)
void	set_domain_names(std::vector< std::string > domain_names) Set the domain names.
std::vector< std::shared_ptr< Subject > > &	get_subjects() Return the Subjects (as a reference)
std::vector< std::shared_ptr< Subject > >	get_non_excluded_subjects() Return the non-excluded Subjects (as a reference)
void	set_subjects(const std::vector< std::shared_ptr< Subject > > & subjects) Set the Subjects.
void	update_subjects()
bool	get_originals_present() const Return if originals are present.
bool	get_groomed_present() const Return if groomed files are present.
bool	get_particles_present() const Return if particle files are present.
bool	get_images_present() Return if images are present (e.g. CT/MRI)
bool	get_fixed_subjects_present() Return if there are fixed subjects present.
bool	get_excluded_subjects_present() Return if there are excluded subjects present.
std::vector< std::string >	get_feature_names() Get feature names.
std::vector< std::string >	get_image_names() Get image names.
std::vector< std::string >	get_group_names() Get group names.
std::vector< std::string >	get_group_values(const std::string & group_name) const Get possible group values.
Parameters	get_parameters(const std::string & name, std::string domain_name ="") Retrieve parameters based on key.
std::map< std::string, Parameters >	get_parameter_map(const std::string & name) Retrieve full parameter map for a given name.
void	set_parameter_map(const std::string & name, std::map< std::string, Parameters > map) Set parameter map for a given name.
void	set_parameters(const std::string & name, Parameters params, std::string domain_name ="") Store parameters based on key.
void	clear_parameters(const std::string & name) Clear parameters based on key.
int	get_supported_version() const Get the supported version (this version of the code)
int	get_version() const Get the version of the currently loaded project.
std::vector< LandmarkDefinition >	get_landmarks(int domain_id) Return the set of landmarks definitions for a particular domain.
std::vector< std::vector< LandmarkDefinition > >	get_all_landmark_definitions() Return all landmark definitions.
void	set_landmark_definitions(std::vector< std::vector< LandmarkDefinition > > defs) Set all landmark definitions.
bool	get_landmarks_present() Return if landmarks are present.
void	set_landmarks(int domain_id, std::vector< LandmarkDefinition > landmarks) Set landmarks for this project.
void	new_landmark(int domain_id) Add a new landmark.
std::vector< DomainType >	get_original_domain_types() Return the original domain types.
std::vector< DomainType >	get_groomed_domain_types() Return the groomed domain types.
void	set_original_domain_types(std::vector< DomainType > domain_types) Set the original domain types.
void	set_groomed_domain_types(std::vector< DomainType > domain_types) Get the groomed domain types.

Detailed Description

class shapeworks::Project;

Representation of a project.

The Project class encapsulates the spreadsheet based file format for storing project data.

Public Functions Documentation

function Project

Project()

function ~Project

~Project()

function load

bool load(
    const std::string & filename
)

Load from project file.

function save

bool save(
    const std::string & filename =""
)

Save to project file.

function set_project_path

void set_project_path(
    const std::string & path
)

Set the project path.

function get_project_path

std::string get_project_path()

Return the project path.

function get_filename

std::string get_filename()

Return the filename.

function set_filename

void set_filename(
    std::string filename
)

Set project filename.

function get_headers

std::vector< std::string > get_headers()

Return the headers of the subject sheet.

function get_string_column

std::vector< std::string > get_string_column(
    const std::string & name
) const

Return a column by name.

function get_number_of_subjects

int get_number_of_subjects()

Return the number of subjects in the project.

function get_number_of_domains_per_subject

int get_number_of_domains_per_subject()

Return the number of domains.

function get_domain_names

std::vector< std::string > get_domain_names()

Return the domain names (e.g. femur, pelvis, etc)

function set_domain_names

void set_domain_names(
    std::vector< std::string > domain_names
)

Set the domain names.

function get_subjects

std::vector< std::shared_ptr< Subject > > & get_subjects()

Return the Subjects (as a reference)

function get_non_excluded_subjects

std::vector< std::shared_ptr< Subject > > get_non_excluded_subjects()

Return the non-excluded Subjects (as a reference)

function set_subjects

void set_subjects(
    const std::vector< std::shared_ptr< Subject > > & subjects
)

Set the Subjects.

function update_subjects

void update_subjects()

function get_originals_present

bool get_originals_present() const

Return if originals are present.

function get_groomed_present

bool get_groomed_present() const

Return if groomed files are present.

function get_particles_present

bool get_particles_present() const

Return if particle files are present.

function get_images_present

bool get_images_present()

Return if images are present (e.g. CT/MRI)

function get_fixed_subjects_present

bool get_fixed_subjects_present()

Return if there are fixed subjects present.

function get_excluded_subjects_present

bool get_excluded_subjects_present()

Return if there are excluded subjects present.

function get_feature_names

std::vector< std::string > get_feature_names()

Get feature names.

function get_image_names

std::vector< std::string > get_image_names()

Get image names.

function get_group_names

std::vector< std::string > get_group_names()

Get group names.

function get_group_values

std::vector< std::string > get_group_values(
    const std::string & group_name
) const

Get possible group values.

function get_parameters

Parameters get_parameters(
    const std::string & name,
    std::string domain_name =""
)

Retrieve parameters based on key.

function get_parameter_map

std::map< std::string, Parameters > get_parameter_map(
    const std::string & name
)

Retrieve full parameter map for a given name.

function set_parameter_map

void set_parameter_map(
    const std::string & name,
    std::map< std::string, Parameters > map
)

Set parameter map for a given name.

function set_parameters

void set_parameters(
    const std::string & name,
    Parameters params,
    std::string domain_name =""
)

Store parameters based on key.

function clear_parameters

void clear_parameters(
    const std::string & name
)

Clear parameters based on key.

function get_supported_version

int get_supported_version() const

Get the supported version (this version of the code)

function get_version

int get_version() const

Get the version of the currently loaded project.

function get_landmarks

std::vector< LandmarkDefinition > get_landmarks(
    int domain_id
)

Return the set of landmarks definitions for a particular domain.

function get_all_landmark_definitions

std::vector< std::vector< LandmarkDefinition > > get_all_landmark_definitions()

Return all landmark definitions.

function set_landmark_definitions

void set_landmark_definitions(
    std::vector< std::vector< LandmarkDefinition > > defs
)

Set all landmark definitions.

function get_landmarks_present

bool get_landmarks_present()

Return if landmarks are present.

function set_landmarks

void set_landmarks(
    int domain_id,
    std::vector< LandmarkDefinition > landmarks
)

Set landmarks for this project.

function new_landmark

void new_landmark(
    int domain_id
)

Add a new landmark.

function get_original_domain_types

std::vector< DomainType > get_original_domain_types()

Return the original domain types.

function get_groomed_domain_types

std::vector< DomainType > get_groomed_domain_types()

Return the groomed domain types.

function set_original_domain_types

void set_original_domain_types(
    std::vector< DomainType > domain_types
)

Set the original domain types.

function set_groomed_domain_types

void set_groomed_domain_types(
    std::vector< DomainType > domain_types
)

Get the groomed domain types.

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Updated on 2024-03-17 at 12:58:44 -0600