shapeworks::Subject

Representation of a single subject. More...

#include <Subject.h>

Public Types

	Name
using project::types::StringMap	StringMap
using project::types::StringList	StringList

Public Functions

	Name
	Subject()
	~Subject()
void	set_original_filenames(StringList filenames) Set original filenames (one per domain)
StringList	get_original_filenames() Get original filenames.
void	set_groomed_filenames(StringList filenames) Set groomed filenames.
StringList	get_groomed_filenames() Get groomed filenames.
void	set_local_particle_filenames(StringList filenames) Set local particle filenames (one per domain)
StringList	get_local_particle_filenames() Get local particle filenames.
void	set_world_particle_filenames(StringList filenames) Set the world particle filenames.
StringList	get_world_particle_filenames() Get the world particle filenames.
void	set_landmarks_filenames(StringList filenames) Get the landmarks filenames (one per domain)
StringList	get_landmarks_filenames() Set the landmarks filenames.
void	set_constraints_filenames(StringList filenames) Get the constraints filenames (one per domain)
StringList	get_constraints_filenames() Set the constratins filenames.
void	set_number_of_domains(int number_of_domains) Set the number of domains.
int	get_number_of_domains() Get the number of domains.
StringMap	get_feature_filenames() const Get the feature map filenames.
void	set_feature_filenames(const StringMap & feature_filenames) Set the feature map filenames.
std::vector< std::vector< double > >	get_groomed_transforms() const Get the groomed transforms (one vector per domain)
void	set_groomed_transforms(std::vector< std::vector< double > > transforms) Set the groomed transforms (one vector per domain)
void	set_groomed_transform(int i, std::vector< double > transform) Set the i-th groomed transform.
std::vector< std::vector< double > >	get_procrustes_transforms() const Get the procrustes transforms (one vector per domain)
void	set_procrustes_transforms(std::vector< std::vector< double > > transforms) Set the procrustes transforms (one vector per domain)
StringMap	get_group_values() const Get the group values.
std::string	get_group_value(std::string group_name) Get a specific group value.
void	set_group_values(const StringMap & group_values) Set the group values.
StringMap	get_extra_values() const Get extra values (extra columns we don't interpret)
void	set_extra_values(StringMap extra_values)
StringMap	get_table_values() const Get all table values.
void	set_table_values(StringMap table_values)
std::string	get_display_name() Get the display name.
void	set_display_name(std::string display_name) Set the display name.
bool	is_fixed() Get if this subject is fixed or not.
void	set_fixed(bool fixed) Set if this subject is fixed or not.
bool	is_excluded() Get if this subject is excluded or not.
void	set_excluded(bool excluded) Set if this subject is excluded or not.
std::string	get_notes() Get the notes.
void	set_notes(std::string notes) Set the notes.

Detailed Description

class shapeworks::Subject;

Representation of a single subject.

The Subject class encapsulates one "sample" in the shapeworks system (e.g. one row in a spreadsheet project) A Subject may have multiple segmentations/domains associated with it.

Public Types Documentation

using StringMap

using shapeworks::Subject::StringMap =  project::types::StringMap;

using StringList

using shapeworks::Subject::StringList =  project::types::StringList;

Public Functions Documentation

function Subject

Subject()

function ~Subject

~Subject()

function set_original_filenames

void set_original_filenames(
    StringList filenames
)

Set original filenames (one per domain)

function get_original_filenames

StringList get_original_filenames()

Get original filenames.

function set_groomed_filenames

void set_groomed_filenames(
    StringList filenames
)

Set groomed filenames.

function get_groomed_filenames

StringList get_groomed_filenames()

Get groomed filenames.

function set_local_particle_filenames

void set_local_particle_filenames(
    StringList filenames
)

Set local particle filenames (one per domain)

function get_local_particle_filenames

StringList get_local_particle_filenames()

Get local particle filenames.

function set_world_particle_filenames

void set_world_particle_filenames(
    StringList filenames
)

Set the world particle filenames.

function get_world_particle_filenames

StringList get_world_particle_filenames()

Get the world particle filenames.

function set_landmarks_filenames

void set_landmarks_filenames(
    StringList filenames
)

Get the landmarks filenames (one per domain)

function get_landmarks_filenames

StringList get_landmarks_filenames()

Set the landmarks filenames.

function set_constraints_filenames

void set_constraints_filenames(
    StringList filenames
)

Get the constraints filenames (one per domain)

function get_constraints_filenames

StringList get_constraints_filenames()

Set the constratins filenames.

function set_number_of_domains

void set_number_of_domains(
    int number_of_domains
)

Set the number of domains.

function get_number_of_domains

int get_number_of_domains()

Get the number of domains.

function get_feature_filenames

StringMap get_feature_filenames() const

Get the feature map filenames.

function set_feature_filenames

void set_feature_filenames(
    const StringMap & feature_filenames
)

Set the feature map filenames.

function get_groomed_transforms

std::vector< std::vector< double > > get_groomed_transforms() const

Get the groomed transforms (one vector per domain)

function set_groomed_transforms

void set_groomed_transforms(
    std::vector< std::vector< double > > transforms
)

Set the groomed transforms (one vector per domain)

function set_groomed_transform

void set_groomed_transform(
    int i,
    std::vector< double > transform
)

Set the i-th groomed transform.

function get_procrustes_transforms

std::vector< std::vector< double > > get_procrustes_transforms() const

Get the procrustes transforms (one vector per domain)

function set_procrustes_transforms

void set_procrustes_transforms(
    std::vector< std::vector< double > > transforms
)

Set the procrustes transforms (one vector per domain)

function get_group_values

StringMap get_group_values() const

Get the group values.

function get_group_value

std::string get_group_value(
    std::string group_name
)

Get a specific group value.

function set_group_values

void set_group_values(
    const StringMap & group_values
)

Set the group values.

function get_extra_values

StringMap get_extra_values() const

Get extra values (extra columns we don't interpret)

function set_extra_values

void set_extra_values(
    StringMap extra_values
)

function get_table_values

StringMap get_table_values() const

Get all table values.

function set_table_values

void set_table_values(
    StringMap table_values
)

function get_display_name

std::string get_display_name()

Get the display name.

function set_display_name

void set_display_name(
    std::string display_name
)

Set the display name.

function is_fixed

bool is_fixed()

Get if this subject is fixed or not.

function set_fixed

void set_fixed(
    bool fixed
)

Set if this subject is fixed or not.

function is_excluded

bool is_excluded()

Get if this subject is excluded or not.

function set_excluded

void set_excluded(
    bool excluded
)

Set if this subject is excluded or not.

function get_notes

std::string get_notes()

Get the notes.

function set_notes

void set_notes(
    std::string notes
)

Set the notes.

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Updated on 2024-03-17 at 12:58:44 -0600