shapeworks::CorrespondenceFunction

Correspondence term.

#include <CorrespondenceFunction.h>

Inherits from shapeworks::VectorFunction, itk::LightObject

Public Types

	Name
typedef CorrespondenceFunction	Self
typedef itk::SmartPointer< Self >	Pointer
typedef itk::SmartPointer< const Self >	ConstPointer
typedef VectorFunction	Superclass
typedef ShapeDataType::DataType	DataType
typedef Superclass::VectorType	VectorType
typedef ParticleSystem::PointType	PointType
typedef vnl_vector< DataType >	vnl_vector_type
typedef vnl_matrix< DataType >	vnl_matrix_type

Public Functions

	Name
	itkNewMacro(Self )
	itkStaticConstMacro(Dimension , unsigned int , VDimension )
void	SetShapeData(ShapeDataType * s) Access the shape matrix.
ShapeDataType *	GetShapeData()
const ShapeDataType *	GetShapeData() const
void	SetShapeGradient(ShapeGradientType * s) Access the shape gradient matrix.
ShapeGradientType *	GetShapeGradient()
const ShapeGradientType *	GetShapeGradient() const
virtual VectorType	Evaluate(unsigned int , unsigned int , const ParticleSystem * , double & , double & ) const
virtual VectorType	Evaluate(unsigned int , unsigned int , const ParticleSystem * , double & maxtimestep) const
virtual double	Energy(unsigned int a, unsigned int b, const ParticleSystem * c) const
virtual void	BeforeIteration()
virtual void	AfterIteration()
void	SetMinimumVarianceDecay(double initial_value, double final_value, double time_period)
void	SetMinimumVariance(double d)
double	GetMinimumVariance() const
bool	GetHoldMinimumVariance() const
void	SetHoldMinimumVariance(bool b)
void	SetRecomputeCovarianceInterval(int i)
int	GetRecomputeCovarianceInterval() const
void	SetAttributeScales(const std::vector< double > & s)
void	SetDomainsPerShape(int i)
int	GetDomainsPerShape() const
void	SetAttributesPerDomain(const std::vector< int > & i)
void	UseMeanEnergy()
void	UseEntropy()
void	SetXYZ(int i, bool val)
void	SetNormals(int i, bool val)
bool	CheckForNans(vnl_matrix_type mat)
virtual VectorFunction::Pointer	Clone()

Protected Functions

	Name
	CorrespondenceFunction()
virtual	~CorrespondenceFunction()
void	operator=(const CorrespondenceFunction & )
	CorrespondenceFunction(const CorrespondenceFunction & )
virtual void	ComputeUpdates(const ParticleSystem * c)

Public Attributes

	Name
itkTypeMacro(CorrespondenceFunction, VectorFunction) typedef shapeworks typedef shapeworks::ShapeGradientMatrix	ShapeGradientType
constexpr static int	VDimension

Protected Attributes

	Name
ShapeDataType::Pointer	m_ShapeData
ShapeGradientType::Pointer	m_ShapeGradient
std::shared_ptr< vnl_matrix_type >	m_PointsUpdate
double	m_MinimumVariance
double	m_MinimumEigenValue
bool	m_HoldMinimumVariance
int	m_RecomputeCovarianceInterval
double	m_MinimumVarianceDecayConstant
int	m_Counter
std::vector< double >	m_AttributeScales
int	m_DomainsPerShape
std::vector< int >	m_AttributesPerDomain
double	m_CurrentEnergy
bool	m_UseMeanEnergy
std::vector< bool >	m_UseXYZ
std::vector< bool >	m_UseNormals
std::shared_ptr< vnl_matrix_type >	m_points_mean
std::shared_ptr< Eigen::MatrixXd >	m_InverseCovMatrix
int	num_dims
int	num_samples

Additional inherited members

Public Functions inherited from shapeworks::VectorFunction

	Name
	itkTypeMacro(VectorFunction , LightObject )
virtual void	ResetBuffers()
virtual void	BeforeEvaluate(unsigned int , unsigned int , const ParticleSystem * )
virtual void	SetParticleSystem(ParticleSystem * p)
virtual ParticleSystem *	GetParticleSystem() const
virtual void	SetDomainNumber(unsigned int i)
virtual int	GetDomainNumber() const
virtual double	GetRelativeEnergyScaling() const
virtual void	SetRelativeEnergyScaling(double r)

Protected Functions inherited from shapeworks::VectorFunction

	Name
	VectorFunction()
virtual	~VectorFunction()
	VectorFunction(const VectorFunction & )

Protected Attributes inherited from shapeworks::VectorFunction

	Name
ParticleSystem *	m_ParticleSystem
unsigned int	m_DomainNumber

Public Types Documentation

typedef Self

typedef CorrespondenceFunction shapeworks::CorrespondenceFunction::Self;

Standard class typedefs.

typedef Pointer

typedef itk::SmartPointer<Self> shapeworks::CorrespondenceFunction::Pointer;

typedef ConstPointer

typedef itk::SmartPointer<const Self> shapeworks::CorrespondenceFunction::ConstPointer;

typedef Superclass

typedef VectorFunction shapeworks::CorrespondenceFunction::Superclass;

typedef DataType

typedef ShapeDataType::DataType shapeworks::CorrespondenceFunction::DataType;

typedef VectorType

typedef Superclass::VectorType shapeworks::CorrespondenceFunction::VectorType;

Vector & Point types.

typedef PointType

typedef ParticleSystem::PointType shapeworks::CorrespondenceFunction::PointType;

typedef vnl_vector_type

typedef vnl_vector<DataType> shapeworks::CorrespondenceFunction::vnl_vector_type;

typedef vnl_matrix_type

typedef vnl_matrix<DataType> shapeworks::CorrespondenceFunction::vnl_matrix_type;

Public Functions Documentation

function itkNewMacro

itkNewMacro(
    Self 
)

Method for creation through the object factory.

function itkStaticConstMacro

itkStaticConstMacro(
    Dimension ,
    unsigned int ,
    VDimension 
)

Dimensionality of the domain of the particle system.

function SetShapeData

inline void SetShapeData(
    ShapeDataType * s
)

Access the shape matrix.

function GetShapeData

inline ShapeDataType * GetShapeData()

function GetShapeData

inline const ShapeDataType * GetShapeData() const

function SetShapeGradient

inline void SetShapeGradient(
    ShapeGradientType * s
)

Access the shape gradient matrix.

function GetShapeGradient

inline ShapeGradientType * GetShapeGradient()

function GetShapeGradient

inline const ShapeGradientType * GetShapeGradient() const

function Evaluate

virtual VectorType Evaluate(
    unsigned int ,
    unsigned int ,
    const ParticleSystem * ,
    double & ,
    double & 
) const

Reimplements: shapeworks::VectorFunction::Evaluate

The first argument is a pointer to the particle system. The second argument is the index of the domain within that particle system. The third argument is the index of the particle location within the given domain.

function Evaluate

inline virtual VectorType Evaluate(
    unsigned int ,
    unsigned int ,
    const ParticleSystem * ,
    double & maxtimestep
) const

Reimplements: shapeworks::VectorFunction::Evaluate

The first argument is a pointer to the particle system. The second argument is the index of the domain within that particle system. The third argument is the index of the particle location within the given domain.

function Energy

inline virtual double Energy(
    unsigned int a,
    unsigned int b,
    const ParticleSystem * c
) const

Reimplements: shapeworks::VectorFunction::Energy

function BeforeIteration

inline virtual void BeforeIteration()

Reimplements: shapeworks::VectorFunction::BeforeIteration

Called before each iteration of a solver.

function AfterIteration

inline virtual void AfterIteration()

Reimplements: shapeworks::VectorFunction::AfterIteration

Called after each iteration of the solver.

function SetMinimumVarianceDecay

inline void SetMinimumVarianceDecay(
    double initial_value,
    double final_value,
    double time_period
)

function SetMinimumVariance

inline void SetMinimumVariance(
    double d
)

function GetMinimumVariance

inline double GetMinimumVariance() const

function GetHoldMinimumVariance

inline bool GetHoldMinimumVariance() const

function SetHoldMinimumVariance

inline void SetHoldMinimumVariance(
    bool b
)

function SetRecomputeCovarianceInterval

inline void SetRecomputeCovarianceInterval(
    int i
)

function GetRecomputeCovarianceInterval

inline int GetRecomputeCovarianceInterval() const

function SetAttributeScales

inline void SetAttributeScales(
    const std::vector< double > & s
)

function SetDomainsPerShape

inline void SetDomainsPerShape(
    int i
)

Set/Get the number of domains per shape.

function GetDomainsPerShape

inline int GetDomainsPerShape() const

function SetAttributesPerDomain

inline void SetAttributesPerDomain(
    const std::vector< int > & i
)

function UseMeanEnergy

inline void UseMeanEnergy()

function UseEntropy

inline void UseEntropy()

function SetXYZ

inline void SetXYZ(
    int i,
    bool val
)

function SetNormals

inline void SetNormals(
    int i,
    bool val
)

function CheckForNans

inline bool CheckForNans(
    vnl_matrix_type mat
)

function Clone

inline virtual VectorFunction::Pointer Clone()

Reimplements: shapeworks::VectorFunction::Clone

Protected Functions Documentation

function CorrespondenceFunction

inline CorrespondenceFunction()

function ~CorrespondenceFunction

inline virtual ~CorrespondenceFunction()

function operator=

void operator=(
    const CorrespondenceFunction & 
)

function CorrespondenceFunction

CorrespondenceFunction(
    const CorrespondenceFunction & 
)

function ComputeUpdates

virtual void ComputeUpdates(
    const ParticleSystem * c
)

Public Attributes Documentation

variable ShapeGradientType

itkTypeMacro(CorrespondenceFunction, VectorFunction) typedef shapeworks typedef shapeworks::ShapeGradientMatrix ShapeGradientType;

variable VDimension

static constexpr static int VDimension = 3;

Protected Attributes Documentation

variable m_ShapeData

ShapeDataType::Pointer m_ShapeData;

variable m_ShapeGradient

ShapeGradientType::Pointer m_ShapeGradient;

variable m_PointsUpdate

std::shared_ptr< vnl_matrix_type > m_PointsUpdate;

variable m_MinimumVariance

double m_MinimumVariance;

variable m_MinimumEigenValue

double m_MinimumEigenValue;

variable m_HoldMinimumVariance

bool m_HoldMinimumVariance;

variable m_RecomputeCovarianceInterval

int m_RecomputeCovarianceInterval;

variable m_MinimumVarianceDecayConstant

double m_MinimumVarianceDecayConstant;

variable m_Counter

int m_Counter;

variable m_AttributeScales

std::vector< double > m_AttributeScales;

variable m_DomainsPerShape

int m_DomainsPerShape;

variable m_AttributesPerDomain

std::vector< int > m_AttributesPerDomain;

variable m_CurrentEnergy

double m_CurrentEnergy;

variable m_UseMeanEnergy

bool m_UseMeanEnergy;

variable m_UseXYZ

std::vector< bool > m_UseXYZ;

variable m_UseNormals

std::vector< bool > m_UseNormals;

variable m_points_mean

std::shared_ptr< vnl_matrix_type > m_points_mean;

variable m_InverseCovMatrix

std::shared_ptr< Eigen::MatrixXd > m_InverseCovMatrix;

variable num_dims

int num_dims;

variable num_samples

int num_samples;

Updated on 2024-03-17 at 12:58:44 -0600