Files

• dir Applications
  • dir Applications/shapeworks
    • file Applications/shapeworks/Command.h
    • file Applications/shapeworks/Commands.h
    • file Applications/shapeworks/Executable.h
    • file Applications/shapeworks/SharedCommandData.h
• dir Documentation
  • dir Documentation/Doxygen
• dir Libs
  • dir Libs/Alignment
    • dir Libs/Alignment/Transforms
      • file Libs/Alignment/Transforms/itkAdvancedTransform.h
      • file Libs/Alignment/Transforms/itkCompactlySupportedRBFSparseKernelTransform.h
      • file Libs/Alignment/Transforms/itkKernelTransform2.h
      • file Libs/Alignment/Transforms/itkSparseKernelTransform.h
      • file Libs/Alignment/Transforms/itkThinPlateSplineKernelTransform2.h
    • file Libs/Alignment/Procrustes3D.h
  • dir Libs/Analyze
    • file Libs/Analyze/Analyze.h
    • file Libs/Analyze/CustomSurfaceReconstructionFilter.h
    • file Libs/Analyze/ItkToVtk.h
    • file Libs/Analyze/LegacyMeshGenerator.h
      Mesh generation.
    • file Libs/Analyze/MeshCache.h
    • file Libs/Analyze/MeshGenerator.h
      Mesh generation.
    • file Libs/Analyze/MeshGroup.h
    • file Libs/Analyze/MeshManager.h
    • file Libs/Analyze/MeshWorkQueue.h
    • file Libs/Analyze/MeshWorker.h
      Worker class for parallel mesh reconstruction.
    • file Libs/Analyze/ParticleArea.h
    • file Libs/Analyze/Particles.h
    • file Libs/Analyze/QMeshWarper.h
    • file Libs/Analyze/Reconstruction.h
    • file Libs/Analyze/Shape.h
    • file Libs/Analyze/StudioEnums.h
    • file Libs/Analyze/StudioMesh.h
    • file Libs/Analyze/SurfaceReconstructor.h
      Surface Reconstruction Layer.
    • file Libs/Analyze/vtkPolyDataToImageData.h
  • dir Libs/Application
    • dir Libs/Application/DeepSSM
      • file Libs/Application/DeepSSM/DeepSSMJob.h
    • dir Libs/Application/Job
      • file Libs/Application/Job/Job.h
      • file Libs/Application/Job/PythonWorker.h
    • file Libs/Application/ShapeWorksVtkOutputWindow.h
  • dir Libs/Common
    • file Libs/Common/Logging.h
    • file Libs/Common/Profiling.h
    • file Libs/Common/Region.h
    • file Libs/Common/Shapeworks.h
    • file Libs/Common/ShapeworksUtils.h
  • dir Libs/Groom
    • file Libs/Groom/Groom.h
    • file Libs/Groom/GroomParameters.h
  • dir Libs/Image
    • file Libs/Image/Image.h
    • file Libs/Image/ImageRegistration.h
    • file Libs/Image/ImageUtils.h
    • file Libs/Image/VectorImage.h
    • file Libs/Image/itkTPGACLevelSetImageFilter.h
  • dir Libs/Mesh
    • dir Libs/Mesh/PreviewMeshQC
      • file Libs/Mesh/PreviewMeshQC/FEAreaCoverage.h
      • file Libs/Mesh/PreviewMeshQC/FEAutoMesher.h
      • file Libs/Mesh/PreviewMeshQC/FECVDDecimationModifier.h
      • file Libs/Mesh/PreviewMeshQC/FECoreMesh.h
      • file Libs/Mesh/PreviewMeshQC/FEElement.h
      • file Libs/Mesh/PreviewMeshQC/FEFillHole.h
      • file Libs/Mesh/PreviewMeshQC/FEFixMesh.h
      • file Libs/Mesh/PreviewMeshQC/FEMesh.h
      • file Libs/Mesh/PreviewMeshQC/FEMeshSmoothingModifier.h
      • file Libs/Mesh/PreviewMeshQC/FENodeElementList.h
      • file Libs/Mesh/PreviewMeshQC/FENodeFaceList.h
      • file Libs/Mesh/PreviewMeshQC/FENodeNodeList.h
      • file Libs/Mesh/PreviewMeshQC/FEVTKExport.h
      • file Libs/Mesh/PreviewMeshQC/FEVTKImport.h
      • file Libs/Mesh/PreviewMeshQC/Intersect.h
      • file Libs/Mesh/PreviewMeshQC/math3d.h
      • file Libs/Mesh/PreviewMeshQC/stdafx.h
    • file Libs/Mesh/Mesh.h
    • file Libs/Mesh/MeshComputeThickness.h
    • file Libs/Mesh/MeshUtils.h
    • file Libs/Mesh/MeshWarper.h
      Mesh warping capability.
    • file Libs/Mesh/itkMultiplyByConstantImageFilter.h
    • file Libs/Mesh/meshFIM.h
  • dir Libs/Optimize
    • file Libs/Optimize/CorrespondenceMode.h
    • file Libs/Optimize/EarlyStoppingConfig.h
    • file Libs/Optimize/GradientDescentOptimizer.h
    • dir Libs/Optimize/Constraints
      • file Libs/Optimize/Constraints/Constraint.h
      • file Libs/Optimize/Constraints/ConstraintType.h
      • file Libs/Optimize/Constraints/Constraints.h
      • file Libs/Optimize/Constraints/FreeFormConstraint.h
      • file Libs/Optimize/Constraints/PlaneConstraint.h
    • dir Libs/Optimize/Container
      • file Libs/Optimize/Container/GenericContainer.h
      • file Libs/Optimize/Container/GenericContainerArray.h
      • file Libs/Optimize/Container/MeanCurvatureContainer.h
    • dir Libs/Optimize/Domain
      • file Libs/Optimize/Domain/ContourDomain.h
      • file Libs/Optimize/Domain/DomainType.h
      • file Libs/Optimize/Domain/ImageDomain.h
      • file Libs/Optimize/Domain/ImageDomainWithCurvature.h
      • file Libs/Optimize/Domain/ImageDomainWithGradN.h
      • file Libs/Optimize/Domain/ImageDomainWithGradients.h
      • file Libs/Optimize/Domain/ImplicitSurfaceDomain.h
      • file Libs/Optimize/Domain/MeshDomain.h
      • file Libs/Optimize/Domain/MeshGeoEntry.h
      • file Libs/Optimize/Domain/ParticleDomain.h
      • file Libs/Optimize/Domain/ParticleRegionDomain.h
      • file Libs/Optimize/Domain/Surface.h
    • dir Libs/Optimize/Function
      • file Libs/Optimize/Function/CorrespondenceFunction.h
      • file Libs/Optimize/Function/DisentangledCorrespondenceFunction.h
      • file Libs/Optimize/Function/DualVectorFunction.h
      • file Libs/Optimize/Function/LegacyCorrespondenceFunction.h
      • dir Libs/Optimize/Function/EarlyStop
        • file Libs/Optimize/Function/EarlyStop/EarlyStopping.h
        • file Libs/Optimize/Function/EarlyStop/MorphologicalDeviationScore.h
      • file Libs/Optimize/Function/SamplingFunction.h
      • file Libs/Optimize/Function/VectorFunction.h
    • dir Libs/Optimize/Matrix
      • file Libs/Optimize/Matrix/LegacyShapeMatrix.h
      • file Libs/Optimize/Matrix/LinearRegressionShapeMatrix.h
      • file Libs/Optimize/Matrix/MixedEffectsShapeMatrix.h
      • file Libs/Optimize/Matrix/ShapeGradientMatrix.h
      • file Libs/Optimize/Matrix/ShapeMatrix.h
    • dir Libs/Optimize/Neighborhood
      • file Libs/Optimize/Neighborhood/ParticleNeighborhood.h
      • file Libs/Optimize/Neighborhood/ParticlePointIndexPair.h
    • dir Libs/Optimize/Utils
      • file Libs/Optimize/Utils/MemoryUsage.h
      • file Libs/Optimize/Utils/ObjectReader.h
      • file Libs/Optimize/Utils/ObjectWriter.h
      • file Libs/Optimize/Utils/OptimizationVisualizer.h
      • file Libs/Optimize/Utils/ParticleGaussianModeWriter.h
      • file Libs/Optimize/Utils/ParticleGoodBadAssessment.h
    • file Libs/Optimize/Observer.h
    • file Libs/Optimize/Optimize.h
    • file Libs/Optimize/OptimizeParameterFile.h
    • file Libs/Optimize/OptimizeParameters.h
    • file Libs/Optimize/ParticleEvents.h
    • file Libs/Optimize/ParticleSystem.h
    • file Libs/Optimize/ProcrustesRegistration.h
    • file Libs/Optimize/Sampler.h
  • dir Libs/Particles
    • file Libs/Particles/CorrespondenceEvaluation.h
    • file Libs/Particles/EvaluationUtil.h
    • file Libs/Particles/ParticleFile.h
    • file Libs/Particles/ParticleNormalEvaluation.h
    • file Libs/Particles/ParticleShapeStatistics.h
    • file Libs/Particles/ParticleSystemEvaluation.h
    • file Libs/Particles/ReconstructSurface.h
    • file Libs/Particles/ShapeEvaluation.h
  • dir Libs/Project
    • file Libs/Project/DeepSSMParameters.h
    • file Libs/Project/ExcelProjectReader.h
    • file Libs/Project/ExcelProjectWriter.h
    • file Libs/Project/JsonProjectReader.h
    • file Libs/Project/JsonProjectWriter.h
    • file Libs/Project/Parameters.h
    • file Libs/Project/Project.h
    • file Libs/Project/ProjectReader.h
    • file Libs/Project/ProjectUtils.h
    • file Libs/Project/Subject.h
    • file Libs/Project/Variant.h
  • dir Libs/Python
    • file Libs/Python/PythonAnalyze.h
    • file Libs/Python/PythonGroom.h
    • file Libs/Python/pybind_utils.h
  • dir Libs/Utils
    • file Libs/Utils/EigenUtils.h
    • file Libs/Utils/PlatformUtils.h
    • file Libs/Utils/StringUtils.h
    • file Libs/Utils/Utils.h
• file Module.dox
• dir Studio
  • dir Studio/Analysis
    • file Studio/Analysis/AnalysisTool.h
    • file Studio/Analysis/ParticleAreaPanel.h
    • file Studio/Analysis/ShapeEvaluationJob.h
    • file Studio/Analysis/ShapeScalarPanel.h
  • dir Studio/Data
    • file Studio/Data/DataTool.h
    • file Studio/Data/ExportUtils.h
    • file Studio/Data/LandmarkItemDelegate.h
    • file Studio/Data/LandmarkTableModel.h
    • file Studio/Data/MeshSettings.h
    • file Studio/Data/Preferences.h
    • file Studio/Data/PreferencesWindow.h
    • file Studio/Data/SegmentationToolPanel.h
    • file Studio/Data/Session.h
    • file Studio/Data/ShapeWorksWorker.h
    • file Studio/Data/Telemetry.h
    • file Studio/Data/Worker.h
  • dir Studio/DeepSSM
    • file Studio/DeepSSM/DeepSSMTool.h
  • dir Studio/Groom
    • file Studio/Groom/GroomTool.h
  • dir Studio/Interface
    • file Studio/Interface/CompareWidget.h
    • file Studio/Interface/CustomSlider.h
    • file Studio/Interface/ExportImageDialog.h
    • file Studio/Interface/KeyboardShortcuts.h
    • file Studio/Interface/LogWindow.h
    • file Studio/Interface/ShapeWorksStudioApp.h
    • file Studio/Interface/SplashScreen.h
    • file Studio/Interface/StatusBarWidget.h
    • file Studio/Interface/StudioLogger.h
    • file Studio/Interface/Style.h
    • file Studio/Interface/UpdateChecker.h
    • file Studio/Interface/WheelEventForwarder.h
  • dir Studio/Job
    • file Studio/Job/GroupPvalueJob.h
    • file Studio/Job/NetworkAnalysisJob.h
    • file Studio/Job/ParticleAreaJob.h
    • file Studio/Job/ParticleNormalEvaluationJob.h
    • file Studio/Job/ShapeScalarJob.h
    • file Studio/Job/StatsGroupDWDJob.h
    • file Studio/Job/StatsGroupLDAJob.h
  • dir Studio/Optimize
    • file Studio/Optimize/OptimizeTool.h
    • file Studio/Optimize/QOptimize.h
  • dir Studio/Resources
    • file Studio/Resources/resource.h
  • dir Studio/ShapeWorksMONAI
    • file Studio/ShapeWorksMONAI/MonaiLabelJob.h
    • file Studio/ShapeWorksMONAI/MonaiLabelTool.h
    • file Studio/ShapeWorksMONAI/MonaiLabelUtils.h
  • dir Studio/Utils
    • file Studio/Utils/AnalysisUtils.h
    • file Studio/Utils/ImageLabel.h
    • file Studio/Utils/StackWalker.h
    • file Studio/Utils/StudioUtils.h
    • file Studio/Utils/WindowsCrashHandler.h
  • dir Studio/Visualization
    • file Studio/Visualization/ColorMap.h
    • file Studio/Visualization/ColorSchemes.h
    • file Studio/Visualization/LandmarkWidget.h
    • file Studio/Visualization/Lightbox.h
    • file Studio/Visualization/MeshSlice.h
    • file Studio/Visualization/PaintWidget.h
    • file Studio/Visualization/ParticleColors.h
    • file Studio/Visualization/PlaneWidget.h
    • file Studio/Visualization/SliceView.h
    • file Studio/Visualization/StudioHandleWidget.h
    • file Studio/Visualization/StudioImageActorPointPlacer.h
    • file Studio/Visualization/StudioInteractorStyle.h
    • file Studio/Visualization/StudioSliceInteractorStyle.h
    • file Studio/Visualization/Viewer.h
    • file Studio/Visualization/Visualizer.h

---

Updated on 2026-11-03 at 20:56:16 +0000