Inheritance diagram for Seg3D::ActionSpeedlineAlgo:

Public Types
typedef itk::Image< int, VOL_DIM_C >	MASK_IMAGE_TYPE

typedef itk::Image< int, SLICE_DIM_C >	MASK_IMAGE_TYPE_2D

typedef itk::Image< VALUE_TYPE, SLICE_DIM_C >	TYPED_IMAGE_TYPE_2D

typedef itk::LiveWireImageFunction< TYPED_IMAGE_TYPE_2D >	LiveWireType

typedef LiveWireType::OutputType	PATH_TYPE

Public Types inherited from Seg3D::ITKFilter
typedef itk::Image< unsigned short, 3 >	USHORT_IMAGE_TYPE

typedef itk::Image< unsigned int, 3 >	UINT_IMAGE_TYPE

typedef itk::Image< float, 3 >	FLOAT_IMAGE_TYPE

typedef itk::Image< unsigned char, 3 >	UCHAR_IMAGE_TYPE

typedef Core::ITKImageDataT< float >	FLOAT_CONTAINER_TYPE

typedef Core::ITKImageDataT< unsigned int >	UINT_CONTAINER_TYPE

typedef Core::ITKImageDataT< unsigned short >	USHORT_CONTAINER_TYPE

typedef Core::ITKImageDataT< unsigned char >	UCHAR_CONTAINER_TYPE

Public Member Functions
template<class TYPED_IMAGE_TYPE , class TYPED_IMAGE_TYPE_2D >
TYPED_IMAGE_TYPE_2D::Pointer	extract_2D_image (typename TYPED_IMAGE_TYPE::Pointer image)

template<class TYPED_IMAGE_TYPE_2D >
TYPED_IMAGE_TYPE_2D::IndexType	extract_2D_point (const Point &point)

template<class PATH_TYPE >
Point	build_3D_point (typename PATH_TYPE::ContinuousIndexType slice_point)

	if (StateEngine::Instance() ->get_state(this->world_path_state_id_, state_var))

this world_paths_	delete_all_paths ()

this	get_itk_image_from_layer (this->target_layer_, input_image)

livewire	SetInputImage (input_image_2D)

livewire	SetGradientMagnitudeWeight (this->grad_mag_weight_)

livewire	SetZeroCrossingWeight (this->zero_cross_weight_)

livewire	SetGradientDirectionWeight (this->grad_dir_weight_)

livewire	SetUseImageSpacing (this->image_spacing_)

livewire	SetUseFaceConnectedness (this->face_conn_)

	if (this->roi_mask_layer_id_!="<none>")

this world_paths_	set_start_point (this->vertices_[0])

this world_paths_	set_end_point (this->vertices_[end_index])

	for (size_t index=0;index< this->vertices_.size();++index)

	Application::PostEvent (boost::bind(&StateSpeedlinePath::set, world_path_state, this->world_paths_, ActionSource::NONE_E))

virtual std::string	get_filter_name () const

virtual std::string	get_layer_prefix () const

Public Member Functions inherited from Seg3D::LayerFilter
virtual void	raise_abort () override

virtual bool	check_abort () override

void	raise_stop ()

bool	check_stop ()

virtual void	abort_and_wait () override

void	connect_abort (const LayerHandle &layer)

void	connect_stop (const LayerHandle &layer)

Core::NotifierHandle	get_notifier ()

bool	find_layer (const std::string &layer_id, LayerHandle &layer)

bool	lock_for_use (LayerHandle layer)

bool	lock_for_processing (LayerHandle layer)

bool	lock_for_deletion (LayerHandle layer)

bool	create_and_lock_data_layer_from_layer (LayerHandle src_layer, LayerHandle &dst_layer)

bool	create_and_lock_data_layer (const Core::GridTransform &grid_trans, LayerHandle src_layer, LayerHandle &dst_layer)

bool	create_cropped_large_volume_layer (const Core::GridTransform &crop_trans, LayerHandle src_layer, LayerHandle &dst_layer)

bool	create_and_lock_mask_layer_from_layer (LayerHandle src_layer, LayerHandle &dst_layer)

bool	create_and_lock_mask_layer_from_layer (LayerHandle src_layer, LayerHandle &dst_layer, std::string dst_name)

bool	create_and_lock_mask_layer (const Core::GridTransform &grid_trans, LayerHandle src_layer, LayerHandle &dst_layer)

bool	dispatch_unlock_layer (LayerHandle layer)

bool	dispatch_delete_layer (LayerHandle layer)

bool	dispatch_insert_data_volume_into_layer (LayerHandle layer, Core::DataVolumeHandle data, bool update_histogram)

bool	dispatch_insert_mask_volume_into_layer (LayerHandle layer, Core::MaskVolumeHandle mask)

void	create_undo_redo_and_provenance_record (Core::ActionContextHandle context, Core::ActionHandle action, bool split_prov=false)

bool	update_provenance_action_string (Core::ActionHandle action)

void	set_sandbox (SandboxID sandbox)

SandboxID	get_sandbox ()

void	report_error (const std::string &error)

Layer::filter_key_type	get_key () const

Public Attributes
std::string	target_layer_id_

std::string	output_mask_layer_id_

std::string	roi_mask_layer_id_

int	slice_type_

size_t	slice_number_

std::vector< Point >	vertices_

DataLayerHandle	target_layer_

MaskLayerHandle	roi_mask_layer_

MaskLayerHandle	output_mask_layer_

double	grad_mag_weight_

double	zero_cross_weight_

double	grad_dir_weight_

bool	image_spacing_

bool	face_conn_

std::string	world_path_state_id_

StateSpeedlinePathHandle	world_path_state

StateBaseHandle	state_var

ITKImageDataT< int >::Handle	roi_mask_image

ITKImageDataT< VALUE_TYPE >::Handle	input_image

TYPED_IMAGE_TYPE_2D::Pointer	input_image_2D

LiveWireType::Pointer	livewire = LiveWireType::New()

const size_t	num_of_vertices = this->vertices_.size()

const size_t	end_index = num_of_vertices - 1

Additional Inherited Members
Static Public Member Functions inherited from Core::Runnable
static void	Start (RunnableHandle runnable)

Protected Member Functions inherited from Seg3D::ITKFilter
template<class T >
bool	get_itk_image_from_layer (const LayerHandle &layer, typename Core::ITKImageDataT< T >::Handle &image, bool invert=false)

template<class T >
bool	get_itk_image_from_mask_layer (const LayerHandle &layer, typename Core::ITKImageDataT< T >::Handle &image, double label=1.0)

template<class T >
bool	insert_itk_image_into_layer (const LayerHandle &layer, typename itk::Image< T, 3 > *itk_image)

template<class T >
bool	insert_itk_image_pointer_into_layer (const LayerHandle &layer, typename itk::Image< T, 3 >::Pointer itk_image)

template<class T >
bool	insert_itk_positive_labels_into_mask_layer (const LayerHandle &layer, typename itk::Image< T, 3 > *itk_image, bool invert=false)

template<class T >
bool	insert_itk_positive_labels_pointer_into_mask_layer (const LayerHandle &layer, typename itk::Image< T, 3 >::Pointer itk_image, bool invert=false)

template<class T >
bool	insert_itk_label_into_mask_layer (const LayerHandle &layer, typename itk::Image< T, 3 > *itk_image, T label)

template<class T >
bool	insert_itk_label_pointer_into_mask_layer (const LayerHandle &layer, typename itk::Image< T, 3 >::Pointer itk_image, T label)

template<class T >
bool	convert_and_insert_itk_image_into_layer (const LayerHandle &layer, typename itk::Image< T, 3 > *itk_image, Core::DataType data_type)

template<class T >
bool	convert_and_insert_itk_image_pointer_into_layer (const LayerHandle &layer, typename itk::Image< T, 3 >::Pointer itk_image, Core::DataType data_type)

template<class T >
void	forward_abort_to_filter (T filter_pointer, LayerHandle layer)

template<class T >
void	observe_itk_progress (T filter_pointer, const LayerHandle &layer, float progress_start=0.0, float progress_amount=1.0)

template<class T >
void	observe_itk_iterations (T filter_pointer, boost::function< void(itk::Object *) > iteration_fcn)

template<class T >
void	limit_number_of_itk_threads (T filter_pointer)

virtual void	handle_abort ()

virtual void	handle_stop ()

Protected Member Functions inherited from Seg3D::LayerFilter
virtual void	run_filter ()=0

virtual void	run ()

Member Function Documentation

virtual std::string Seg3D::ActionSpeedlineAlgo::get_filter_name ( ) const

inlinevirtual

GET_FILTER_NAME: This functions returns the name of the filter that is used in the error report.

Implements Seg3D::LayerFilter.

virtual std::string Seg3D::ActionSpeedlineAlgo::get_layer_prefix ( ) const

inlinevirtual

GET_LAYER_PREFIX: This function returns the name of the filter. The latter is prepended to the new layer name, when a new layer is generated.

Implements Seg3D::LayerFilter.

Member Data Documentation

TYPED_IMAGE_TYPE_2D::Pointer Seg3D::ActionSpeedlineAlgo::input_image_2D

Initial value:

=

extract_2D_image< TYPED_IMAGE_TYPE, TYPED_IMAGE_TYPE_2D >( input_image->get_image() )

The documentation for this class was generated from the following file:

Application/Tools/Actions/ActionSpeedline.cc

Public Types

Public Member Functions

Public Attributes

Additional Inherited Members

Member Function Documentation

Member Data Documentation