Inheritance diagram for Seg3D::ITKFilter:

Public Types
typedef itk::Image< unsigned short, 3 >	USHORT_IMAGE_TYPE

typedef itk::Image< unsigned int, 3 >	UINT_IMAGE_TYPE

typedef itk::Image< float, 3 >	FLOAT_IMAGE_TYPE

typedef itk::Image< unsigned char, 3 >	UCHAR_IMAGE_TYPE

typedef Core::ITKImageDataT< float >	FLOAT_CONTAINER_TYPE

typedef Core::ITKImageDataT< unsigned int >	UINT_CONTAINER_TYPE

typedef Core::ITKImageDataT< unsigned short >	USHORT_CONTAINER_TYPE

typedef Core::ITKImageDataT< unsigned char >	UCHAR_CONTAINER_TYPE

Protected Member Functions
template<class T >
bool	get_itk_image_from_layer (const LayerHandle &layer, typename Core::ITKImageDataT< T >::Handle &image, bool invert=false)

template<class T >
bool	get_itk_image_from_mask_layer (const LayerHandle &layer, typename Core::ITKImageDataT< T >::Handle &image, double label=1.0)

template<class T >
bool	insert_itk_image_into_layer (const LayerHandle &layer, typename itk::Image< T, 3 > *itk_image)

template<class T >
bool	insert_itk_image_pointer_into_layer (const LayerHandle &layer, typename itk::Image< T, 3 >::Pointer itk_image)

template<class T >
bool	insert_itk_positive_labels_into_mask_layer (const LayerHandle &layer, typename itk::Image< T, 3 > *itk_image, bool invert=false)

template<class T >
bool	insert_itk_positive_labels_pointer_into_mask_layer (const LayerHandle &layer, typename itk::Image< T, 3 >::Pointer itk_image, bool invert=false)

template<class T >
bool	insert_itk_label_into_mask_layer (const LayerHandle &layer, typename itk::Image< T, 3 > *itk_image, T label)

template<class T >
bool	insert_itk_label_pointer_into_mask_layer (const LayerHandle &layer, typename itk::Image< T, 3 >::Pointer itk_image, T label)

template<class T >
bool	convert_and_insert_itk_image_into_layer (const LayerHandle &layer, typename itk::Image< T, 3 > *itk_image, Core::DataType data_type)

template<class T >
bool	convert_and_insert_itk_image_pointer_into_layer (const LayerHandle &layer, typename itk::Image< T, 3 >::Pointer itk_image, Core::DataType data_type)

template<class T >
void	forward_abort_to_filter (T filter_pointer, LayerHandle layer)

template<class T >
void	observe_itk_progress (T filter_pointer, const LayerHandle &layer, float progress_start=0.0, float progress_amount=1.0)

template<class T >
void	observe_itk_iterations (T filter_pointer, boost::function< void(itk::Object *) > iteration_fcn)

template<class T >
void	limit_number_of_itk_threads (T filter_pointer)

virtual void	handle_abort ()

virtual void	handle_stop ()

Protected Member Functions inherited from Seg3D::LayerFilter
virtual void	run_filter ()=0

virtual void	run ()

Additional Inherited Members
Public Member Functions inherited from Seg3D::LayerFilter
virtual void	raise_abort () override

virtual bool	check_abort () override

void	raise_stop ()

bool	check_stop ()

virtual void	abort_and_wait () override

void	connect_abort (const LayerHandle &layer)

void	connect_stop (const LayerHandle &layer)

Core::NotifierHandle	get_notifier ()

bool	find_layer (const std::string &layer_id, LayerHandle &layer)

bool	lock_for_use (LayerHandle layer)

bool	lock_for_processing (LayerHandle layer)

bool	lock_for_deletion (LayerHandle layer)

bool	create_and_lock_data_layer_from_layer (LayerHandle src_layer, LayerHandle &dst_layer)

bool	create_and_lock_data_layer (const Core::GridTransform &grid_trans, LayerHandle src_layer, LayerHandle &dst_layer)

bool	create_cropped_large_volume_layer (const Core::GridTransform &crop_trans, LayerHandle src_layer, LayerHandle &dst_layer)

bool	create_and_lock_mask_layer_from_layer (LayerHandle src_layer, LayerHandle &dst_layer)

bool	create_and_lock_mask_layer_from_layer (LayerHandle src_layer, LayerHandle &dst_layer, std::string dst_name)

bool	create_and_lock_mask_layer (const Core::GridTransform &grid_trans, LayerHandle src_layer, LayerHandle &dst_layer)

bool	dispatch_unlock_layer (LayerHandle layer)

bool	dispatch_delete_layer (LayerHandle layer)

bool	dispatch_insert_data_volume_into_layer (LayerHandle layer, Core::DataVolumeHandle data, bool update_histogram)

bool	dispatch_insert_mask_volume_into_layer (LayerHandle layer, Core::MaskVolumeHandle mask)

void	create_undo_redo_and_provenance_record (Core::ActionContextHandle context, Core::ActionHandle action, bool split_prov=false)

bool	update_provenance_action_string (Core::ActionHandle action)

void	set_sandbox (SandboxID sandbox)

SandboxID	get_sandbox ()

virtual std::string	get_filter_name () const =0

virtual std::string	get_layer_prefix () const =0

void	report_error (const std::string &error)

Layer::filter_key_type	get_key () const

Static Public Member Functions inherited from Core::Runnable
static void	Start (RunnableHandle runnable)

Member Function Documentation

template<class T >

bool Seg3D::ITKFilter::convert_and_insert_itk_image_into_layer	(	const LayerHandle &	layer,
		typename itk::Image< T, 3 > *	itk_image,
		Core::DataType	data_type
	)

inlineprotected

CONVERT_AND_INSERT_ITK_IMAGE_INTO_LAYER: Insert an itk image back into a layer

template<class T >

bool Seg3D::ITKFilter::convert_and_insert_itk_image_pointer_into_layer	(	const LayerHandle &	layer,
		typename itk::Image< T, 3 >::Pointer	itk_image,
		Core::DataType	data_type
	)

inlineprotected

CONVERT_AND_INSERT_ITK_IMAGE_POINTER_INTO_LAYER: Insert an itk image back into a layer

template<class T >

void Seg3D::ITKFilter::forward_abort_to_filter	(	T	filter_pointer,
		LayerHandle	layer
	)

inlineprotected

FORWARD_ABORT_TO_FILTER: Forward a Seg3D abort to an itk filter

template<class T >

bool Seg3D::ITKFilter::get_itk_image_from_layer	(	const LayerHandle &	layer,
		typename Core::ITKImageDataT< T >::Handle &	image,
		bool	invert = `false`
	)

inlineprotected

GET_ITK_IMAGE_FROM_LAYER: Retrieve an itk image from a data or mask layer

template<class T >

bool Seg3D::ITKFilter::get_itk_image_from_mask_layer	(	const LayerHandle &	layer,
		typename Core::ITKImageDataT< T >::Handle &	image,
		double	label = `1.0`
	)

inlineprotected

GET_ITK_IMAGE_FROM_MASK_LAYER: Retrieve an itk image from a data or mask layer

void Seg3D::ITKFilter::handle_abort ( )

protectedvirtual

HANDLE_ABORT: A virtual function that can be overloaded

Reimplemented from Seg3D::LayerFilter.

void Seg3D::ITKFilter::handle_stop ( )

protectedvirtual

HANDLE_STOP: A virtual function that can be overloaded

Reimplemented from Seg3D::LayerFilter.

template<class T >

bool Seg3D::ITKFilter::insert_itk_image_into_layer	(	const LayerHandle &	layer,
		typename itk::Image< T, 3 > *	itk_image
	)

inlineprotected

INSERT_ITK_IMAGE_INTO_LAYER: Insert an itk image back into a layer

template<class T >

bool Seg3D::ITKFilter::insert_itk_image_pointer_into_layer	(	const LayerHandle &	layer,
		typename itk::Image< T, 3 >::Pointer	itk_image
	)

inlineprotected

INSERT_ITK_IMAGE_POINTER_INTO_LAYER: Insert an itk image back into a layer

template<class T >

bool Seg3D::ITKFilter::insert_itk_label_into_mask_layer	(	const LayerHandle &	layer,
		typename itk::Image< T, 3 > *	itk_image,
		T	label
	)

inlineprotected

INSERT_ITK_LABEL_INTO_MASK_LAYER: Insert an itk image back into a layer

template<class T >

bool Seg3D::ITKFilter::insert_itk_label_pointer_into_mask_layer	(	const LayerHandle &	layer,
		typename itk::Image< T, 3 >::Pointer	itk_image,
		T	label
	)

inlineprotected

INSERT_ITK_LABEL_POINTER_INTO_MASK_LAYER: Insert an itk image back into a layer

template<class T >

bool Seg3D::ITKFilter::insert_itk_positive_labels_into_mask_layer	(	const LayerHandle &	layer,
		typename itk::Image< T, 3 > *	itk_image,
		bool	invert = `false`
	)

inlineprotected

INSERT_ITK_POSITIVE_LABELS_INTO_MASK_LAYER: Insert an itk image back into a layer

template<class T >

bool Seg3D::ITKFilter::insert_itk_positive_labels_pointer_into_mask_layer	(	const LayerHandle &	layer,
		typename itk::Image< T, 3 >::Pointer	itk_image,
		bool	invert = `false`
	)

inlineprotected

INSERT_ITK_POSITIVE_LABELS_POINTER_INTO_MASK_LAYER: Insert an itk image back into a layer

template<class T >

void Seg3D::ITKFilter::limit_number_of_itk_threads ( T filter_pointer )

inlineprotected

LIMIT_NUMBER_OF_ITK_THREADS: Limit the number of itk threads so that at least one thread can be used to allow for interaction in the program. NOTE: If the host machine does not have multiple cores this function will not do anything

template<class T >

void Seg3D::ITKFilter::observe_itk_iterations	(	T	filter_pointer,
		boost::function< void(itk::Object *) >	iteration_fcn
	)

inlineprotected

OBSERVE_ITK_ITERATIONS: Forward progess on iterations to a user specified function template< class T > void observe_itk_iterations( T filter_pointer, boost::function< void( itk::Object* ) > iteration_fcn ) { this->observe_itk_iterations_internal( itk::ProcessObject::Pointer( filter_pointer ), iteration_fcn ); }

template<class T >

void Seg3D::ITKFilter::observe_itk_progress	(	T	filter_pointer,
		const LayerHandle &	layer,
		float	progress_start = `0.0`,
		float	progress_amount = `1.0`
	)

inlineprotected

OBSERVE_ITK_PROGRESS: Forward the progress an itk filter is making and check for the abort status of the layer

The documentation for this class was generated from the following files:

Application/Filters/ITKFilter.h
Application/Filters/ITKFilter.cc

Public Types

Protected Member Functions

Additional Inherited Members

Member Function Documentation