New in ShapeWorks Studio

DeepSSM in Studio

New in ShapeWorks 6.2, we have added the ability to run DeepSSM tools in ShapeWorks Studio.

Studio DeepSSM - Augmentation

See DeepSSM in Studio for more information.

Multiple Domain Alignments

New in ShapeWorks 6.2, we have added support for multiple alignment strategies in ShapeWorks Studio. This allows analysis with and without articulation with a choice of reference domain, or global alignment.

See Multiple Domain Alignments for more information.

Shape Evaluation Charts

New in ShapeWorks 6.2, we have added new shape evaluation charts. Charts for Compactness, Specificity and Generalizaion are provided.

Studio DeepSSM - Shape Evaluation

Group p-value Display

New in ShapeWorks 6.2, we have added the ability to view group-wise p-values for surface differences.

Studio DeepSSM - Group p-value

Multiple Domains

As of ShapeWorks 6.1, we added support in ShapeWorks Studio for modeling multiple domains (e.g. anatomies) in joint correspondance model.

ShapeWorks Project with Multiple Domains - Analyze

See Multiple Domains for more information.

Mesh Grooming

As of ShapeWorks 6.1, we added support in ShapeWorks Studio for mesh grooming, including smoothing, hole filling, and iterative closest point pre-alignment.

ShapeWorks Studio Groom Module for Meshes

See Groom Module for more information.

Mesh Support

As of ShapeWorks 6.0, we added mesh support to ShapeWorks Studio including loading meshes, optimizing shape models directly on meshes, and visualizing meshes with scalar feature values. Meshes can store values at vertices such as "cortical thickness", or "fibrosis” and ShapeWorks Studio uses them in a similar manner as feature maps/volumes.

Open meshes in Studio Screenshot showing open meshes in Studio

Visualizing features on surface mesh Visualizing features on surface mesh

We also added a new surface reconstruction method with support for both mesh or image inputs. This method is much faster and is the new default.

New and faster surface reconstruction New and faster surface reconstruction

Improved Studio Interface

As of ShapeWorks 6.0, we added support for automatic glyph sizing, draging/dropping of images and meshes. Scalar bar color is now opposite of background color (e.g., when background is white, text should be dark) (user request).

Samples names color is opposite of the background color for a better contrast Studio background

Surface Reconstruction

ShapeWorks Studio provides a particle-based surface reconstruction that can reconstruct high quality surface meshes with fewer number of particles. See How to Analyze Your Shape Model? for details about the method.

With particle-based surface reconstruction, there is not need to optimize denser particle systems (i.e., with more particles) to reconstruct surface meshes with subvoxel accuracy Reconstruction error vs number of particles

(old) VTK-based surface reconstruction

(new) particle-based surface reconstruction

Dynamic Loading

ShapeWorks Studio support load-on-demand, which makes it more scalable by supporting loading in order of 100s of samples. For instance, an old small project that took 10+ seconds to load now starts instantly in Studio.

(old) without dynamic loading

(new) with dynamic loading

Live Particles Movement

ShapeWorks Studio allows for live introspection of the correpsondence placement optimization process and the ability to abort the optimization at any time (e.g., changing algorithmic parameters).

Feature Maps

ShapeWorks Studio has the ability to integrate feature maps. A feature map is a 3d image volume that contains scalar values to be associated with each shape’s surface. For example, this could be raw or processed CT/MRI data. The feature map can be displayed for each surface by choosing the desired feature map in the feature map combobox at the bottom of the screen. After the correspondence is generated, the average feature map can be displayed on the mean shape in the analysis tab.