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Seg3D
2.4
Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute.
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Seg3D
2.4
Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute.
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Public Member Functions | |
| DataVolume (const GridTransform &grid_transform, const DataBlockHandle &data_block) | |
| virtual VolumeType | get_type () const |
| Get the type of the data volume. | |
| virtual double | get_min () const |
| Get the minimum value. | |
| virtual double | get_max () const |
| Get the maximum value. | |
| virtual double | get_cum_value (double fraction) const |
| Get the value at a specific point in the histogram. | |
| virtual bool | is_valid () const |
| Check whether the volume has a valid data block. | |
| DataBlockHandle | get_data_block () const |
| Get the data block that contains the volume data. | |
| DataType | get_data_type () const |
| Get the data type of the data in this volume. | |
| virtual mutex_type & | get_mutex () |
| Get access to the mutex protecting this DataVolume. | |
| virtual NrrdDataHandle | convert_to_nrrd () |
| Get the volume data as a nrrd wrapped in a NrrdData structure. | |
| virtual DataBlock::generation_type | get_generation () const |
| Get the generation number of the data volume. | |
| virtual DataBlock::generation_type | register_data (DataBlock::generation_type generation=-1) |
| Register the underlying data with the DataBlockManager. | |
| virtual void | unregister_data () |
| Unregister the underlying data with DataBlockManager. | |
| virtual size_t | get_byte_size () const |
| Get the size of the data in bytes. | |
| void | get_bricks (std::vector< DataVolumeBrickHandle > &bricks) |
| Split the volume into small bricks if not yet generated, and return a vector of the bricks. | |
| bool | insert_slice (const DataSliceHandle slice) |
| Insert a slice into the volume. | |
| bool | extract_slice (SliceType type, DataBlock::index_type index, DataSliceHandle &slice) |
| Extract a slice from the volume. | |
Static Public Member Functions | |
| static bool | LoadDataVolume (const boost::filesystem::path &filename, DataVolumeHandle &volume, std::string &error) |
| Load a DataVolume from a nrrd file. | |
| static bool | SaveDataVolume (const boost::filesystem::path &filepath, DataVolumeHandle &volume, std::string &error, bool compress, int level) |
| Save a DataVolume to a nrrd file. | |
| static bool | CreateEmptyData (GridTransform grid_transform, DataType data_type, DataVolumeHandle &data) |
| Create an empty data volume with given dimensions. | |
| static bool | CreateInvalidData (GridTransform grid_transform, DataVolumeHandle &data) |
| Create a data volume with given dimensions, but no data container associated with it. | |
| static bool | ConvertToCanonicalVolume (const DataVolumeHandle &src_volume, DataVolumeHandle &dst_volume) |
| static bool | DuplicateVolume (const DataVolumeHandle &src_mask, DataVolumeHandle &dst_mask) |
| Duplicate the data volume. | |
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Convert the source volume to a canonical-axis-aligned volume. Returns true if conversion is done, otherwise false.
1.8.10
