shapeworks::Subject

Representation of a single subject. More...

#include <Subject.h>

Public Functions

	Name
	Subject()
	~Subject()
void	set_original_filenames(std::vector< std::string > filenames) Set original filenames (one per domain)
std::vector< std::string >	get_original_filenames() Get original filenames.
void	set_groomed_filenames(std::vector< std::string > filenames) Set groomed filenames.
std::vector< std::string >	get_groomed_filenames() Get groomed filenames.
void	set_local_particle_filenames(std::vector< std::string > filenames) Set local particle filenames (one per domain)
std::vector< std::string >	get_local_particle_filenames() Get local particle filenames.
void	set_world_particle_filenames(std::vector< std::string > filenames) Set the world particle filenames.
std::vector< std::string >	get_world_particle_filenames() Get the world particle filenames.
void	set_landmarks_filenames(std::vector< std::string > filenames) Get the landmarks filenames (one per domain)
std::vector< std::string >	get_landmarks_filenames() Set the landmarks filenames.
void	set_constraints_filenames(std::vector< std::string > filenames) Get the constraints filenames (one per domain)
std::vector< std::string >	get_constraints_filenames() Set the constratins filenames.
void	set_number_of_domains(int number_of_domains) Set the number of domains.
int	get_number_of_domains() Get the number of domains.
void	set_image_filenames(std::vector< std::string > filenames) Set image filenames.
std::vector< std::string >	get_image_filenames() Get image filenames.
std::map< std::string, std::string >	get_feature_filenames() const Get the feature map filenames.
void	set_feature_filenames(const std::map< std::string, std::string > & feature_filenames) Set the feature map filenames.
std::vector< std::vector< double > >	get_groomed_transforms() const Get the groomed transforms (one vector per domain)
void	set_groomed_transforms(std::vector< std::vector< double >> transforms) Set the groomed transforms (one vector per domain)
void	set_groomed_transform(int i, std::vector< double > transform) Set the i-th groomed transform.
std::vector< std::vector< double > >	get_procrustes_transforms() const Get the procrustes transforms (one vector per domain)
void	set_procrustes_transforms(std::vector< std::vector< double >> transforms) Set the procrustes transforms (one vector per domain)
std::map< std::string, std::string >	get_group_values() const Get the group values.
std::string	get_group_value(std::string group_name) Get a specific group value.
void	set_group_values(const std::map< std::string, std::string > & group_values) Set the group values.
std::map< std::string, std::string >	get_extra_values() const Get extra values (extra columns we don't interpret)
void	set_extra_values(std::map< std::string, std::string > extra_values)
std::map< std::string, std::string >	get_table_values() const Get all table values.
void	set_table_values(std::map< std::string, std::string > table_values)
std::string	get_display_name() Get the display name.
void	set_display_name(std::string display_name) Set the display name.

Detailed Description

class shapeworks::Subject;

Representation of a single subject.

The Subject class encapsulates one "sample" in the shapeworks system (e.g. one row in a spreadsheet project) A Subject may have multiple segmentations/domains associated with it.

Public Functions Documentation

function Subject

Subject()

function ~Subject

~Subject()

function set_original_filenames

void set_original_filenames(
    std::vector< std::string > filenames
)

Set original filenames (one per domain)

function get_original_filenames

std::vector< std::string > get_original_filenames()

Get original filenames.

function set_groomed_filenames

void set_groomed_filenames(
    std::vector< std::string > filenames
)

Set groomed filenames.

function get_groomed_filenames

std::vector< std::string > get_groomed_filenames()

Get groomed filenames.

function set_local_particle_filenames

void set_local_particle_filenames(
    std::vector< std::string > filenames
)

Set local particle filenames (one per domain)

function get_local_particle_filenames

std::vector< std::string > get_local_particle_filenames()

Get local particle filenames.

function set_world_particle_filenames

void set_world_particle_filenames(
    std::vector< std::string > filenames
)

Set the world particle filenames.

function get_world_particle_filenames

std::vector< std::string > get_world_particle_filenames()

Get the world particle filenames.

function set_landmarks_filenames

void set_landmarks_filenames(
    std::vector< std::string > filenames
)

Get the landmarks filenames (one per domain)

function get_landmarks_filenames

std::vector< std::string > get_landmarks_filenames()

Set the landmarks filenames.

function set_constraints_filenames

void set_constraints_filenames(
    std::vector< std::string > filenames
)

Get the constraints filenames (one per domain)

function get_constraints_filenames

std::vector< std::string > get_constraints_filenames()

Set the constratins filenames.

function set_number_of_domains

void set_number_of_domains(
    int number_of_domains
)

Set the number of domains.

function get_number_of_domains

int get_number_of_domains()

Get the number of domains.

function set_image_filenames

void set_image_filenames(
    std::vector< std::string > filenames
)

Set image filenames.

function get_image_filenames

std::vector< std::string > get_image_filenames()

Get image filenames.

function get_feature_filenames

std::map< std::string, std::string > get_feature_filenames() const

Get the feature map filenames.

function set_feature_filenames

void set_feature_filenames(
    const std::map< std::string, std::string > & feature_filenames
)

Set the feature map filenames.

function get_groomed_transforms

std::vector< std::vector< double > > get_groomed_transforms() const

Get the groomed transforms (one vector per domain)

function set_groomed_transforms

void set_groomed_transforms(
    std::vector< std::vector< double >> transforms
)

Set the groomed transforms (one vector per domain)

function set_groomed_transform

void set_groomed_transform(
    int i,
    std::vector< double > transform
)

Set the i-th groomed transform.

function get_procrustes_transforms

std::vector< std::vector< double > > get_procrustes_transforms() const

Get the procrustes transforms (one vector per domain)

function set_procrustes_transforms

void set_procrustes_transforms(
    std::vector< std::vector< double >> transforms
)

Set the procrustes transforms (one vector per domain)

function get_group_values

std::map< std::string, std::string > get_group_values() const

Get the group values.

function get_group_value

std::string get_group_value(
    std::string group_name
)

Get a specific group value.

function set_group_values

void set_group_values(
    const std::map< std::string, std::string > & group_values
)

Set the group values.

function get_extra_values

std::map< std::string, std::string > get_extra_values() const

Get extra values (extra columns we don't interpret)

function set_extra_values

void set_extra_values(
    std::map< std::string, std::string > extra_values
)

function get_table_values

std::map< std::string, std::string > get_table_values() const

Get all table values.

function set_table_values

void set_table_values(
    std::map< std::string, std::string > table_values
)

function get_display_name

std::string get_display_name()

Get the display name.

function set_display_name

void set_display_name(
    std::string display_name
)

Set the display name.

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Updated on 2022-07-23 at 16:40:07 -0600