Hierarchy For All Packages

Package Hierarchies:

• usf.saav.alma.algorithm.mesh,
• usf.saav.alma.algorithm.topology,
• usf.saav.alma.app,
• usf.saav.alma.app.views,
• usf.saav.alma.data,
• usf.saav.alma.data.fits,
• usf.saav.alma.data.processors,
• usf.saav.alma.drawing,
• usf.saav.alma.drawing.VolumeRendering,
• usf.saav.alma.util

Class Hierarchy

• java.lang.Object
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • java.util.Vector<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        • usf.saav.alma.algorithm.mesh.ConnectedComponentMesh.ConnectedComponent (implements usf.saav.alma.algorithm.mesh.Mesh.Vertex)
        • usf.saav.alma.algorithm.mesh.Mesh (implements usf.saav.common.algorithm.Surface1D)
          • usf.saav.alma.algorithm.mesh.ConnectedComponentMesh
          • usf.saav.alma.algorithm.mesh.ScalarFieldMesh
  • usf.saav.alma.algorithm.topology.AugmentedJoinTreeNode
    • usf.saav.alma.algorithm.topology.MergeTreeNode
    • usf.saav.alma.algorithm.topology.SplitTreeNode
  • usf.saav.alma.algorithm.topology.AugmentedJoinTreeNode.ComparePersistenceAscending (implements java.util.Comparator<T>)
  • usf.saav.alma.algorithm.topology.AugmentedJoinTreeNode.ComparePersistenceDescending (implements java.util.Comparator<T>)
  • usf.saav.common.BasicObject
    • usf.saav.alma.algorithm.topology.AugmentedJoinTree (implements usf.saav.alma.algorithm.topology.PersistenceSet, java.lang.Runnable)
      • usf.saav.alma.algorithm.topology.MergeTree
      • usf.saav.alma.algorithm.topology.SplitTree
    • usf.saav.common.mvc.BasicComponent.Default (implements usf.saav.common.mvc.BasicComponent)
      • usf.saav.common.mvc.PositionedComponent.Default (implements usf.saav.common.mvc.PositionedComponent)
        • usf.saav.common.mvc.ControllerComponent.Default (implements usf.saav.common.mvc.ControllerComponent)
          • usf.saav.common.mvc.ControllerComponent.Subcontroller (implements usf.saav.common.mvc.ControllerComponent)
            • usf.saav.alma.app.views.SingleScalarFieldView.Controller (implements usf.saav.common.mvc.ControllerComponent)
            • usf.saav.alma.app.views.VolumeRenderingView.Controller (implements usf.saav.common.mvc.ControllerComponent)
          • usf.saav.alma.util.CoordinateSystemController (implements usf.saav.common.mvc.ControllerComponent, usf.saav.alma.util.CoordinateSystem)
          • usf.saav.alma.drawing.SelectBoxDrawing (implements usf.saav.common.mvc.ControllerComponent, usf.saav.common.mvc.ViewComponent)
          • usf.saav.alma.drawing.SelectPointDrawing (implements usf.saav.common.mvc.ControllerComponent, usf.saav.common.mvc.ViewComponent)
          • usf.saav.alma.drawing.VolumeRendering.VolumeRenderer (implements usf.saav.common.mvc.ControllerComponent, usf.saav.common.mvc.ViewComponent)
        • usf.saav.common.mvc.ViewComponent.Default (implements usf.saav.common.mvc.ViewComponent)
          • usf.saav.alma.drawing.ComponentListDrawing (implements usf.saav.common.mvc.ViewComponent)
          • usf.saav.alma.drawing.ContourTreeDrawing (implements usf.saav.common.mvc.ViewComponent)
          • usf.saav.alma.drawing.HistogramDrawing (implements usf.saav.common.mvc.ViewComponent)
            • usf.saav.alma.drawing.VolumeRendering.InteractiveTF1D (implements usf.saav.common.mvc.ControllerComponent, usf.saav.alma.drawing.VolumeRendering.TransferFunction1D, usf.saav.common.mvc.ViewComponent)
          • usf.saav.alma.drawing.LabelDrawing (implements usf.saav.common.mvc.ViewComponent)
            • usf.saav.alma.drawing.LabelDrawing.BasicLabel
            • usf.saav.alma.drawing.LabelDrawing.ComputingLabel
          • usf.saav.alma.drawing.PersistenceDiagramDrawing (implements usf.saav.common.mvc.ControllerComponent, usf.saav.common.mvc.ViewComponent)
          • usf.saav.alma.drawing.ScalarFieldDrawing (implements usf.saav.common.mvc.ViewComponent)
          • usf.saav.alma.drawing.SpectralLineDrawing (implements usf.saav.common.mvc.ViewComponent)
          • usf.saav.common.mvc.ViewComponent.Subview (implements usf.saav.common.mvc.ViewComponent)
            • usf.saav.alma.app.views.SingleScalarFieldView.View (implements usf.saav.common.mvc.PositionedComponent, usf.saav.common.mvc.ViewComponent)
            • usf.saav.alma.app.views.VolumeRenderingView.View (implements usf.saav.common.mvc.PositionedComponent, usf.saav.common.mvc.ViewComponent)
    • usf.saav.alma.util.ContourTreeThread (implements java.lang.Runnable)
    • usf.saav.alma.data.fits.FitsReader.Default (implements usf.saav.alma.data.fits.FitsReader)
      • usf.saav.alma.data.fits.CachedFitsReader (implements usf.saav.alma.data.fits.FitsReader)
      • usf.saav.alma.data.fits.RawFitsReader (implements usf.saav.alma.data.fits.FitsReader)
      • usf.saav.alma.data.fits.SafeFitsReader (implements usf.saav.alma.data.fits.FitsReader)
    • usf.saav.common.monitor.MonitoredDouble
      • usf.saav.alma.data.Settings.SettingsDouble
    • usf.saav.common.monitor.MonitoredInteger
      • usf.saav.alma.data.Settings.SettingsInt
    • usf.saav.common.monitor.MonitoredObject<ObjectType>
      • usf.saav.alma.app.DataManager.MonitoredContourTreeThread
      • usf.saav.alma.app.DataManager.MonitoredLayeredVolume
      • usf.saav.alma.app.DataManager.MonitoredScalarField2D
      • usf.saav.alma.app.DataManager.MonitoredScalarField3D
    • usf.saav.alma.data.ScalarFieldND.Default (implements usf.saav.alma.data.ScalarFieldND)
      • usf.saav.alma.data.processors.PersistenceSimplifierND (implements java.lang.Runnable, usf.saav.alma.data.ScalarFieldND)
        • usf.saav.alma.data.processors.PersistenceSimplifier1D (implements usf.saav.alma.data.ScalarField1D)
        • usf.saav.alma.data.processors.PersistenceSimplifier2D (implements usf.saav.alma.data.ScalarField2D)
        • usf.saav.alma.data.processors.PersistenceSimplifier3D (implements usf.saav.alma.data.ScalarField3D)
      • usf.saav.alma.data.ScalarField1D.Default (implements usf.saav.alma.data.ScalarField1D)
        • usf.saav.alma.data.processors.Extract1Dfrom3D (implements usf.saav.alma.data.ScalarField1D)
        • usf.saav.alma.data.ScalarField1D.Empty
        • usf.saav.alma.data.processors.Subset1D
      • usf.saav.alma.data.ScalarField2D.Default (implements usf.saav.alma.data.ScalarField2D)
        • usf.saav.alma.data.processors.Composite2D (implements usf.saav.alma.data.ScalarField2D)
        • usf.saav.alma.data.processors.Extract2DFrom3D (implements usf.saav.alma.data.ScalarField2D)
        • usf.saav.alma.data.processors.Moment0
        • usf.saav.alma.data.processors.Moment1
        • usf.saav.alma.data.processors.Moment2
        • usf.saav.alma.data.fits.RawFitsReader.FitsSlice
        • usf.saav.alma.data.ScalarField2D.Empty
        • usf.saav.alma.data.ScalarField2D.Test
        • usf.saav.alma.data.processors.Subsample2D
        • usf.saav.alma.data.processors.Subset2D
        • usf.saav.alma.data.Synthetic2D
          • usf.saav.alma.data.Synthetic2D.GaussianMixing
          • usf.saav.alma.data.Synthetic2D.MonkeySaddle
      • usf.saav.alma.data.ScalarField3D.Default (implements usf.saav.alma.data.ScalarField3D)
        • usf.saav.alma.data.processors.Composite3D (implements usf.saav.alma.data.ScalarField3D)
        • usf.saav.alma.data.processors.LayeredVolume (implements usf.saav.alma.data.ScalarField3D)
        • usf.saav.alma.data.fits.RawFitsReader.FitsVolume
        • usf.saav.alma.data.ScalarField3D.Empty
        • usf.saav.alma.data.processors.Subsample3D
        • usf.saav.alma.data.processors.Subset3D
    • usf.saav.alma.data.Settings
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.JInternalFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
          • usf.saav.alma.app.AlmaGui (implements java.awt.event.ActionListener)
          • usf.saav.common.mvc.swing.TGLFrame (implements com.jogamp.opengl.GLEventListener)
            • usf.saav.common.mvc.DefaultGLFrame
              • usf.saav.alma.app.views.SingleScalarFieldView
              • usf.saav.alma.app.views.VolumeRenderingView
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • usf.saav.common.mvc.swing.TApp
              • usf.saav.alma.app.AlmaTDADev
                • usf.saav.alma.app.AlmaTDARelease
  • usf.saav.alma.app.DataManager
  • usf.saav.alma.algorithm.topology.JoinTree (implements java.lang.Runnable)
  • usf.saav.alma.algorithm.topology.JoinTreeNode
  • usf.saav.alma.algorithm.topology.JoinTreeNode.ComparatorValueDescending (implements java.util.Comparator<T>)
  • usf.saav.alma.algorithm.topology.MergeTreeNode.Factory (implements usf.saav.alma.algorithm.topology.AugmentedJoinTreeNode.Factory)
  • usf.saav.alma.algorithm.topology.PseudoContourTree (implements usf.saav.alma.algorithm.topology.PersistenceSet)
  • usf.saav.alma.algorithm.topology.SplitTreeNode.Factory (implements usf.saav.alma.algorithm.topology.AugmentedJoinTreeNode.Factory)
  • usf.saav.alma.data.processors.StraightThru1D (implements usf.saav.alma.data.ScalarField1D)
  • usf.saav.alma.data.processors.StraightThru2D (implements usf.saav.alma.data.ScalarField2D)
  • usf.saav.alma.data.processors.StraightThru3D (implements usf.saav.alma.data.ScalarField3D)
  • usf.saav.alma.drawing.VolumeRendering.TransferFunction1D.Default (implements usf.saav.alma.drawing.VolumeRendering.TransferFunction1D)

Interface Hierarchy

• usf.saav.alma.algorithm.topology.AugmentedJoinTreeNode.Factory
• usf.saav.alma.util.CoordinateSystem
• usf.saav.alma.data.fits.FitsReader
• usf.saav.alma.algorithm.mesh.Mesh.Vertex
• usf.saav.alma.algorithm.topology.PersistenceSet
• usf.saav.alma.data.ScalarFieldND
  • usf.saav.alma.data.ScalarField1D (also extends usf.saav.common.algorithm.Surface1D)
  • usf.saav.alma.data.ScalarField2D (also extends usf.saav.common.algorithm.Surface2D)
  • usf.saav.alma.data.ScalarField3D (also extends usf.saav.common.algorithm.Surface3D)
• usf.saav.common.algorithm.Surface1D
  • usf.saav.alma.data.ScalarField1D (also extends usf.saav.alma.data.ScalarFieldND)
  • usf.saav.alma.data.ScalarField2D (also extends usf.saav.alma.data.ScalarFieldND, usf.saav.common.algorithm.Surface2D)
  • usf.saav.alma.data.ScalarField3D (also extends usf.saav.alma.data.ScalarFieldND, usf.saav.common.algorithm.Surface3D)
  • usf.saav.common.algorithm.Surface2D
    • usf.saav.alma.data.ScalarField2D (also extends usf.saav.alma.data.ScalarFieldND)
    • usf.saav.alma.data.ScalarField3D (also extends usf.saav.alma.data.ScalarFieldND, usf.saav.common.algorithm.Surface3D)
    • usf.saav.common.algorithm.Surface3D (also extends usf.saav.common.algorithm.Surface1D)
      • usf.saav.alma.data.ScalarField3D (also extends usf.saav.alma.data.ScalarFieldND)
  • usf.saav.common.algorithm.Surface3D (also extends usf.saav.common.algorithm.Surface2D)
    • usf.saav.alma.data.ScalarField3D (also extends usf.saav.alma.data.ScalarFieldND)
• usf.saav.alma.drawing.VolumeRendering.TransferFunction1D

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • usf.saav.alma.app.AlmaGui.ViewMode
    • usf.saav.alma.app.AlmaGui.MouseMode
    • usf.saav.alma.app.AlmaGui.TreeDimension
    • usf.saav.alma.app.AlmaGui.TreeType
    • usf.saav.alma.algorithm.topology.AugmentedJoinTreeNode.NodeType