Seg3D::IntensityCorrectionFilterAlgo Member List

This is the complete list of members for Seg3D::IntensityCorrectionFilterAlgo, including all inherited members.

abort_and_wait() override	Seg3D::LayerFilter	virtual
alpha (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
alphaM (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
ATA(order, order, 0) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
ATA_inv (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
catch(...) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo	inline
catch(...) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo	inline
catch(...) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo	inline
catch(...) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo	inline
check_abort() override	Seg3D::LayerFilter	virtual
check_stop()	Seg3D::LayerFilter
connect_abort(const LayerHandle &layer)	Seg3D::LayerFilter
connect_stop(const LayerHandle &layer)	Seg3D::LayerFilter
convert_and_insert_itk_image_into_layer(const LayerHandle &layer, typename itk::Image< T, 3 > *itk_image, Core::DataType data_type)	Seg3D::ITKFilter	inlineprotected
convert_and_insert_itk_image_pointer_into_layer(const LayerHandle &layer, typename itk::Image< T, 3 >::Pointer itk_image, Core::DataType data_type)	Seg3D::ITKFilter	inlineprotected
create_and_lock_data_layer(const Core::GridTransform &grid_trans, LayerHandle src_layer, LayerHandle &dst_layer)	Seg3D::LayerFilter
create_and_lock_data_layer_from_layer(LayerHandle src_layer, LayerHandle &dst_layer)	Seg3D::LayerFilter
create_and_lock_mask_layer(const Core::GridTransform &grid_trans, LayerHandle src_layer, LayerHandle &dst_layer)	Seg3D::LayerFilter
create_and_lock_mask_layer_from_layer(LayerHandle src_layer, LayerHandle &dst_layer)	Seg3D::LayerFilter
create_and_lock_mask_layer_from_layer(LayerHandle src_layer, LayerHandle &dst_layer, std::string dst_name)	Seg3D::LayerFilter
create_cropped_large_volume_layer(const Core::GridTransform &crop_trans, LayerHandle src_layer, LayerHandle &dst_layer)	Seg3D::LayerFilter
create_undo_redo_and_provenance_record(Core::ActionContextHandle context, Core::ActionHandle action, bool split_prov=false)	Seg3D::LayerFilter
data_max (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
data_min (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
dg_data_block (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
dg_image(new FLOAT_CONTAINER_TYPE( dgfilter->GetOutput())) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
dgfilter (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
dispatch_delete_layer(LayerHandle layer)	Seg3D::LayerFilter
dispatch_insert_data_volume_into_layer(LayerHandle layer, Core::DataVolumeHandle data, bool update_histogram)	Seg3D::LayerFilter
dispatch_insert_mask_volume_into_layer(LayerHandle layer, Core::MaskVolumeHandle mask)	Seg3D::LayerFilter
dispatch_unlock_layer(LayerHandle layer)	Seg3D::LayerFilter
dst_layer_ (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
edge_ (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
else (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
factor (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
find_layer(const std::string &layer_id, LayerHandle &layer)	Seg3D::LayerFilter
FLOAT_CONTAINER_TYPE typedef (defined in Seg3D::ITKFilter)	Seg3D::ITKFilter
FLOAT_IMAGE_TYPE typedef (defined in Seg3D::ITKFilter)	Seg3D::ITKFilter
for(size_t j=0;j< size;j++) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo	inline
for(size_t j=0;j< size;j++) data[j] (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
for(size_t j=0;j< size;j++) data[j] (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
for(size_t z=0;z< size_z;z++) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo	inline
for(size_t z=0;z< size_z;z++) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo	inline
for(size_t j=0;j< size;j++) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo	inline
forward_abort_to_filter(dgfilter, this->dst_layer_) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
forward_abort_to_filter(gmag_filter, this->dst_layer_) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
forward_abort_to_filter(gradient_filter, this->dst_layer_) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
Seg3D::ITKFilter::forward_abort_to_filter(T filter_pointer, LayerHandle layer)	Seg3D::ITKFilter	inlineprotected
get_filter_name() const	Seg3D::IntensityCorrectionFilterAlgo	inlinevirtual
get_itk_image_from_layer(this->src_layer_, input_image) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
Seg3D::ITKFilter::get_itk_image_from_layer(const LayerHandle &layer, typename Core::ITKImageDataT< T >::Handle &image, bool invert=false)	Seg3D::ITKFilter	inlineprotected
get_itk_image_from_mask_layer(const LayerHandle &layer, typename Core::ITKImageDataT< T >::Handle &image, double label=1.0)	Seg3D::ITKFilter	inlineprotected
get_key() const	Seg3D::LayerFilter
get_layer_prefix() const	Seg3D::IntensityCorrectionFilterAlgo	inlinevirtual
get_notifier()	Seg3D::LayerFilter
get_sandbox()	Seg3D::LayerFilter
getAx(float w, float nx, float ny, float nz, int order_index) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
getAy(float w, float nx, float ny, float nz, int order_index) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
getAz(float w, float nx, float ny, float nz, int order_index) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
gmag_data_block (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
gmag_filter (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
gmag_image(new FLOAT_CONTAINER_TYPE( gmag_filter->GetOutput())) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
GMagFilterType typedef (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
grad_iter(gradient_image, gradient_image->GetLargestPossibleRegion()) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
gradient_filter (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
gradient_image (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
gradient_image	Seg3D::IntensityCorrectionFilterAlgo
GradientFilterType typedef (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
GradientImageIterator typedef (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
GradientImageType typedef (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
GradientPixelType typedef (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
handle_abort()	Seg3D::ITKFilter	protectedvirtual
handle_stop()	Seg3D::ITKFilter	protectedvirtual
i (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
if(!input_data_block) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo	inline
if(this->check_abort()) return (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
if(!dg_image) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo	inline
if(this->check_abort()) return (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
if(this->check_abort()) return (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
if(!gmag_image) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo	inline
if(!gmag_data_block) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo	inline
if(this->check_abort()) return (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
if(this->check_abort()) return (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
if(this->check_abort()) return (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
if(this->check_abort()) return (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
if(this->check_abort()) return (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
if(this->check_abort()) return (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
if(this->check_abort()) return (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
if(this->preserve_data_format_) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo	inline
input (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
input_data_block (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
input_image (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
insert_itk_image_into_layer(const LayerHandle &layer, typename itk::Image< T, 3 > *itk_image)	Seg3D::ITKFilter	inlineprotected
insert_itk_image_pointer_into_layer(const LayerHandle &layer, typename itk::Image< T, 3 >::Pointer itk_image)	Seg3D::ITKFilter	inlineprotected
insert_itk_label_into_mask_layer(const LayerHandle &layer, typename itk::Image< T, 3 > *itk_image, T label)	Seg3D::ITKFilter	inlineprotected
insert_itk_label_pointer_into_mask_layer(const LayerHandle &layer, typename itk::Image< T, 3 >::Pointer itk_image, T label)	Seg3D::ITKFilter	inlineprotected
insert_itk_positive_labels_into_mask_layer(const LayerHandle &layer, typename itk::Image< T, 3 > *itk_image, bool invert=false)	Seg3D::ITKFilter	inlineprotected
insert_itk_positive_labels_pointer_into_mask_layer(const LayerHandle &layer, typename itk::Image< T, 3 >::Pointer itk_image, bool invert=false)	Seg3D::ITKFilter	inlineprotected
inv_edge_sqr (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
ITKFilter() (defined in Seg3D::ITKFilter)	Seg3D::ITKFilter
j (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
LayerAbstractFilter() (defined in Seg3D::LayerAbstractFilter)	Seg3D::LayerAbstractFilter
LayerFilter() (defined in Seg3D::LayerFilter)	Seg3D::LayerFilter
limit_number_of_itk_threads(T filter_pointer)	Seg3D::ITKFilter	inlineprotected
lock_for_deletion(LayerHandle layer)	Seg3D::LayerFilter
lock_for_processing(LayerHandle layer)	Seg3D::LayerFilter
lock_for_use(LayerHandle layer)	Seg3D::LayerFilter
new_data_max (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
new_data_min (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
observe_itk_iterations(T filter_pointer, boost::function< void(itk::Object *) > iteration_fcn)	Seg3D::ITKFilter	inlineprotected
observe_itk_progress(dgfilter, this->dst_layer_, 0.0, 0.05) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
observe_itk_progress(gmag_filter, this->dst_layer_, 0.1, 0.05) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
observe_itk_progress(gradient_filter, this->dst_layer_, 0.2, 0.05) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
Seg3D::ITKFilter::observe_itk_progress(T filter_pointer, const LayerHandle &layer, float progress_start=0.0, float progress_amount=1.0)	Seg3D::ITKFilter	inlineprotected
order (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
order_ (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
order_counts (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo	static
preserve_data_format_ (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
raise_abort() override	Seg3D::LayerFilter	virtual
raise_stop()	Seg3D::LayerFilter
report_error(const std::string &error)	Seg3D::LayerFilter
res (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
run()	Seg3D::LayerFilter	protectedvirtual
run_filter()=0	Seg3D::LayerFilter	protectedpure virtual
set_sandbox(SandboxID sandbox)	Seg3D::LayerFilter
SetInput(input_image->get_image()) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
SetInput(dg_image->get_image()) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
SetInput(gmag_image->get_image()) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
SetMaximumKernelWidth(8) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
SetUseImageSpacingOff() (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
SetVariance(1.0) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
size (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
size_x (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
size_y (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
size_z (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
src_layer_ (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
Start(RunnableHandle runnable) (defined in Core::Runnable)	Core::Runnable	static
try (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
UCHAR_CONTAINER_TYPE typedef (defined in Seg3D::ITKFilter)	Seg3D::ITKFilter
UCHAR_IMAGE_TYPE typedef (defined in Seg3D::ITKFilter)	Seg3D::ITKFilter
UINT_CONTAINER_TYPE typedef (defined in Seg3D::ITKFilter)	Seg3D::ITKFilter
UINT_IMAGE_TYPE typedef (defined in Seg3D::ITKFilter)	Seg3D::ITKFilter
update_progress(0.7f) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
update_progress(0.85f) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
update_progress(0.9f) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
update_progress(0.99f) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
update_provenance_action_string(Core::ActionHandle action)	Seg3D::LayerFilter
USHORT_CONTAINER_TYPE typedef (defined in Seg3D::ITKFilter)	Seg3D::ITKFilter
USHORT_IMAGE_TYPE typedef (defined in Seg3D::ITKFilter)	Seg3D::ITKFilter
uT(order, 1, 0) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
W (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
while(!grad_iter.IsAtEnd()) (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo	inline
xcenter (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
xscale (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
ycenter (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
yscale (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
zcenter (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
zscale (defined in Seg3D::IntensityCorrectionFilterAlgo)	Seg3D::IntensityCorrectionFilterAlgo
~ITKFilter() (defined in Seg3D::ITKFilter)	Seg3D::ITKFilter	virtual
~LayerAbstractFilter() (defined in Seg3D::LayerAbstractFilter)	Seg3D::LayerAbstractFilter	virtual
~LayerFilter() (defined in Seg3D::LayerFilter)	Seg3D::LayerFilter	virtual
~Runnable() (defined in Core::Runnable)	Core::Runnable	virtual