Seg3D  2.4
Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute.
Static Public Member Functions | List of all members
Core::StdDataBlock Class Reference
Inheritance diagram for Core::StdDataBlock:
Core::DataBlock Core::SharedLockable

Static Public Member Functions

static DataBlockHandle New (size_t nx, size_t ny, size_t nz, DataType type)
 
static DataBlockHandle New (GridTransform transform, DataType type)
 
- Static Public Member Functions inherited from Core::DataBlock
static bool ConvertDataType (const DataBlockHandle &src_data_block, DataBlockHandle &dst_data_block, DataType new_data_type)
 Convert the data to a specific format.
 
static bool PermuteData (const DataBlockHandle &src_data_block, DataBlockHandle &dst_data_block, std::vector< int > permutation)
 
static bool QuantizeData (const DataBlockHandle &src_data_block, DataBlockHandle &dst_data_block, DataType new_data_type)
 
static bool Duplicate (const DataBlockHandle &src_data_block, DataBlockHandle &dst_data_block)
 Clone the data in a datablock by generating a new one and copying the data into it.
 
static bool Pad (DataBlockHandle src_data_block, DataBlockHandle &dst_data_block, int pad=1, double pad_value=0.0)
 
static bool Clip (DataBlockHandle src_data_block, DataBlockHandle &dst_data_block, int width, int height, int depth, double fill_value=0.0)
 
static bool IsBigEndian ()
 Check whether current architecture is big endian.
 
static bool IsLittleEndian ()
 Check whether current architecture is little endian.
 

Additional Inherited Members

- Public Types inherited from Core::DataBlock
typedef long long generation_type
 
typedef int index_type
 
- Public Types inherited from Core::SharedLockable
typedef boost::shared_mutex mutex_type
 
typedef boost::unique_lock< mutex_type > lock_type
 
typedef boost::shared_lock< mutex_type > shared_lock_type
 
typedef boost::upgrade_lock< mutex_type > upgrade_lock_type
 
typedef boost::upgrade_to_unique_lock< mutex_type > upgrade_to_unique_lock_type
 
- Public Member Functions inherited from Core::DataBlock
size_t get_nx () const
 Get the number of samples in the x direction.
 
size_t get_ny () const
 Get the number of samples in the y direction.
 
size_t get_nz () const
 Get the number of samples in the z direction.
 
size_t get_size () const
 Get the total number of samples.
 
size_t get_elem_size () const
 Get the size of the data elements.
 
size_t get_byte_size () const
 Get the size in bytes.
 
index_type to_index (index_type x, index_type y, index_type z) const
 Compute the real index based on the coordinates in index space.
 
void from_index (index_type index, index_type &x, index_type &y, index_type &z) const
 Compute the index components from the actual index.
 
DataType get_data_type () const
 The type of the data.
 
void * get_data ()
 Pointer to the block of data.
 
double get_data_at (index_type x, index_type y, index_type z) const
 Get data at a certain location in the data block.
 
double get_data_at (index_type index) const
 Get data at a certain index location in the data block.
 
void set_data_at (index_type x, index_type y, index_type z, double value)
 Set data at a certain location in the data block.
 
void set_data_at (index_type index, double value)
 Set data at a certain index location in the data block.
 
void clear ()
 Clear the data inside the data block.
 
double get_max () const
 
double get_min () const
 
double get_range () const
 
const Histogramget_histogram () const
 Get the histogram of the underlying data.
 
bool update_histogram ()
 Recompute the histogram. This needs to be triggered each time the data is updated.
 
void update_data_type (DataType type)
 
generation_type get_generation () const
 Get the current generation number of the data volume.
 
void increase_generation ()
 
void set_histogram (const Histogram &histogram)
 Set the histogram of the dataset.
 
void swap_endian ()
 Swap the endianess of the data.
 
void set_data (void *data)
 Set the data pointer of the data.
 
bool insert_slice (const DataSliceHandle slice)
 Insert slice into the datablock.
 
bool extract_slice (SliceType type, index_type index, DataSliceHandle &slice)
 Extract a slice from the datablock.
 
- Public Member Functions inherited from Core::SharedLockable
mutex_type & get_mutex () const
 
- Public Attributes inherited from Core::DataBlock
boost::signals2::signal< void()> data_changed_signal_
 Triggered when data has been changed.
 
- Protected Member Functions inherited from Core::DataBlock
void set_nx (size_t nx)
 Set the dimensions of the datablock.
 
void set_ny (size_t ny)
 
void set_nz (size_t nz)
 
void set_type (DataType type)
 Set the type of the data.
 

The documentation for this class was generated from the following files: