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Seg3D
2.4
Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute.
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Seg3D
2.4
Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute.
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Public Types | |
| typedef boost::signals2::signal< void(double) > | update_progress_signal_type |
 Public Types inherited from Core::RecursiveLockable | |
| typedef boost::recursive_mutex | mutex_type |
| typedef boost::unique_lock< mutex_type > | lock_type |
Public Member Functions | |
| Isosurface (const MaskVolumeHandle &mask_volume) | |
| void | compute (double quality_factor, bool capping_enabled, boost::function< bool() > check_abort) |
| Compute isosurface. quality_factor must be one of: {0.125, 0.25, 0.5, 1.0}. | |
| const PointFVector & | get_points () const |
| const UIntVector & | get_faces () const |
| const VectorFVector & | get_normals () const |
| float | surface_area () const |
| Return the area of the isosurface. | |
| const FloatVector & | get_values () const |
| bool | set_values (const FloatVector &values) |
| void | set_color_map (ColorMapHandle color_map) |
| ColorMapHandle | get_color_map () const |
| Get mapping from vertex values to RGB colors. | |
| void | redraw (bool use_colormap) |
| bool | export_legacy_isosurface (const boost::filesystem::path &path, const std::string &file_prefix) |
| bool | export_vtk_isosurface (const boost::filesystem::path &filename) |
| Writes out an isosurface in ASCII VTK mesh format. | |
| bool | export_stl_ascii_isosurface (const boost::filesystem::path &filename, const std::string &name) |
| Writes out an isosurface in ASCII STL file format. | |
| bool | export_stl_binary_isosurface (const boost::filesystem::path &filename, const std::string &name) |
| Writes out an isosurface in Binary STL file format. | |
| Public Member Functions inherited from Core::RecursiveLockable | |
| mutex_type & | get_mutex () const |
Public Attributes | |
| update_progress_signal_type | update_progress_signal_ |
| bool Core::Isosurface::export_legacy_isosurface | ( | const boost::filesystem::path & | path, |
| const std::string & | file_prefix | ||
| ) |
Write points to .pts file, faces to .fac file, and values (if assigned) to .val file. Returns true on success, false on failure.
path: Path to existing directory where files should be written. file_prefix: File prefix to use for output files (no extension).
Format for .pts: x y z x y z ...
Format for .fac: p1 p2 p3 p1 p2 p3 ...
Format for .val: v1 v2 ...
Note: can't call this function "export" because it is reserved by the Visual C++ compiler.
| const UIntVector & Core::Isosurface::get_faces | ( | ) | const |
Indices into vertices, 3 per face NOTE: This function is not thread-safe, make sure you have the mutex allocated before using this array (use get_mutex())
| const VectorFVector & Core::Isosurface::get_normals | ( | ) | const |
Get one normal per vertex, interpolated NOTE: This function is not thread-safe, make sure you have the mutex allocated before using this array (use get_mutex())
| const PointFVector & Core::Isosurface::get_points | ( | ) | const |
Get 3D points for vertices, each stored only once NOTE: This function is not thread-safe, make sure you have the mutex allocated before using this array (use get_mutex())
| const FloatVector & Core::Isosurface::get_values | ( | ) | const |
Get values per vertex. Returns empty vector if use has not set values. NOTE: This function is not thread-safe, make sure you have the mutex allocated before using this array (use get_mutex())
| void Core::Isosurface::redraw | ( | bool | use_colormap | ) |
Render the isosurface. This function doesn't work in isolation – it must be called from the Seg3D Renderer.
| void Core::Isosurface::set_color_map | ( | ColorMapHandle | color_map | ) |
Set mapping from vertex values to RGB colors. NOTE: This function is not thread-safe. Passing handle since colormap is unlikely to be modified after creation.
| bool Core::Isosurface::set_values | ( | const FloatVector & | values | ) |
Set values for all vertices. Vector must be same size as points and normals vectors or empty. Returns true on success, false on failure. NOTE: This function is not thread-safe, make sure you have the mutex allocated before using this array (use get_mutex())
| update_progress_signal_type Core::Isosurface::update_progress_signal_ |
When new information on progress is available this signal is triggered. If this signal is triggered it should end with a value 1.0 indicating that progress reporting has finished. Progress is measured between 0.0 and 1.0.
1.8.10
