Seg3D Pages

Web pages for Seg3D

View the Project on GitHub SCIInstitute/Seg3D


The ir-tools image registration command line tools (ir-tools wiki, more tool documentation) are available as Python commands in Seg3D. Seg3D needs to be built from source with the CMake option BUILD_MOSAIC_TOOLS turned on (Seg3D build instructions).

Commands in Python

The following commands can be run in Seg3D’s python console. The layerid parameter is not used, and should be set to '<none>'. The Seg3D GitHub repository has sample scripts.