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Seg3D
2.4
Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute.
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Seg3D
2.4
Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute.
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Public Member Functions | |
| ThresholdFilter (double lower_threshold, double upper_threshold) | |
| template<class T > | |
| void | threshold_data (Core::DataBlockHandle dst, double min_val, double max_val) |
| void | set_data_layer (Seg3D::DataLayerHandle data) |
| Seg3D::DataLayerHandle | data_layer () |
| void | set_mask_layer (Seg3D::MaskLayerHandle mask) |
| Seg3D::MaskLayerHandle | mask_layer () |
| double | lower_threshold () |
| double | upper_threshold () |
| virtual void | run_filter () |
| virtual std::string | get_filter_name () const |
| virtual std::string | get_layer_prefix () const |
 Public Member Functions inherited from Seg3D::LayerFilter | |
| virtual void | raise_abort () override |
| virtual bool | check_abort () override |
| void | raise_stop () |
| bool | check_stop () |
| virtual void | abort_and_wait () override |
| void | connect_abort (const LayerHandle &layer) |
| void | connect_stop (const LayerHandle &layer) |
| Core::NotifierHandle | get_notifier () |
| bool | find_layer (const std::string &layer_id, LayerHandle &layer) |
| bool | lock_for_use (LayerHandle layer) |
| bool | lock_for_processing (LayerHandle layer) |
| bool | lock_for_deletion (LayerHandle layer) |
| bool | create_and_lock_data_layer_from_layer (LayerHandle src_layer, LayerHandle &dst_layer) |
| bool | create_and_lock_data_layer (const Core::GridTransform &grid_trans, LayerHandle src_layer, LayerHandle &dst_layer) |
| bool | create_cropped_large_volume_layer (const Core::GridTransform &crop_trans, LayerHandle src_layer, LayerHandle &dst_layer) |
| bool | create_and_lock_mask_layer_from_layer (LayerHandle src_layer, LayerHandle &dst_layer) |
| bool | create_and_lock_mask_layer_from_layer (LayerHandle src_layer, LayerHandle &dst_layer, std::string dst_name) |
| bool | create_and_lock_mask_layer (const Core::GridTransform &grid_trans, LayerHandle src_layer, LayerHandle &dst_layer) |
| bool | dispatch_unlock_layer (LayerHandle layer) |
| bool | dispatch_delete_layer (LayerHandle layer) |
| bool | dispatch_insert_data_volume_into_layer (LayerHandle layer, Core::DataVolumeHandle data, bool update_histogram) |
| bool | dispatch_insert_mask_volume_into_layer (LayerHandle layer, Core::MaskVolumeHandle mask) |
| void | create_undo_redo_and_provenance_record (Core::ActionContextHandle context, Core::ActionHandle action, bool split_prov=false) |
| bool | update_provenance_action_string (Core::ActionHandle action) |
| void | set_sandbox (SandboxID sandbox) |
| SandboxID | get_sandbox () |
| void | report_error (const std::string &error) |
| Layer::filter_key_type | get_key () const |
Additional Inherited Members | |
| Static Public Member Functions inherited from Core::Runnable | |
| static void | Start (RunnableHandle runnable) |
| Protected Member Functions inherited from Seg3D::LayerFilter | |
| virtual void | handle_abort () |
| virtual void | handle_stop () |
| virtual void | run () |
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virtual |
GET_FILTER_NAME: This functions returns the name of the filter that is used in the error report.
Implements Seg3D::LayerFilter.
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virtual |
GET_LAYER_PREFIX: This function returns the name of the filter. The latter is prepended to the new layer name, when a new layer is generated.
Implements Seg3D::LayerFilter.
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virtual |
RUN_FILTER: run the filter
Implements Seg3D::LayerFilter.
1.8.10
