Skip to content
ShapeWorks
Documentation/Doxygen
Initializing search
SCIInstitute/ShapeWorks
ShapeWorks
SCIInstitute/ShapeWorks
Home
Getting Started
Getting Started
Shapes, What & From Where?
Shape Modeling Workflow
ShapeWorks Success Stories
ShapeWorks Interfaces
Examples
How-Tos
For Users
For Users
How to Install ShapeWorks?
How to Cite ShapeWorks?
Revelant Papers
Workflow
Workflow
How to Groom Your Dataset?
Shape Model Optimization
Shape Model Optimization
How to Optimize Your Shape Model?
Optimization Parameters
How to Analyze Your Shape Model?
Feature Highlights
Feature Highlights
Studio Features
Memory Efficiency with OpenVDB
Mesh Support
ShapeWorks Command
Shape Model Evaluation
ShapeWorks in Python
Ellipsoid Joint Generation
AI Assisted Segmentation
ShapeWorks Studio
ShapeWorks Studio
Getting Started
Viewer Controls
Export Options
Data Module
Groom Module
Optimize Module
Analyze Module
Surface Reconstruction
DeepSSM Module
Multiple Domains SSM
Multi-Domain Reference Frames
Shared Boundaries
Segmentation Tool
AI Assisted Segmentation
ShapeWorks Cloud
ShapeWorks Cloud
Getting Started
Datasets
Projects
Data Module
Groom Module
Optimize Module
Analyze Module
Shape Viewer
ShapeWorks Cloud Client
ShapeWorks Tools
ShapeWorks Tools
ShapeWorks Commands
ShapeWorks in Python
ShapeWorks in Python
Getting Started with Jupyter Notebooks
Getting Started with Segmentations
Getting Started with Meshes
Getting Started with Exploring Segmentations
Getting Started with Data Augmentation
Getting Started with Shape Cohort Generator
Array passing without copying
Transforms can be used to center image data or to align two images
Transforms can also be used to align two meshes
Deep Learning & SSMs
Deep Learning & SSMs
PyTorch GPU Support for ShapeWorks
Data Augmentation for Deep Learning
SSMs Directly from Images
Use Cases
Use Cases
Getting Started with Use Cases
Segmentation Based Use Cases
Segmentation Based Use Cases
Ellipsoid: Basic Example
Left Atrium: Shape Model from Segmentations
Shape Model for Multiple Domains from Segmentations
Mesh Based Use Cases
Mesh Based Use Cases
Ellipsoid Mesh: Basic Example
Lumps: Shape Model directly from Mesh
Thin Cavity Bean: Shape Model with Geodesic Distances
Shape Model for Multiple Domains directly from Mesh
Hip: Multiple Domains Alignment
Contour Based Use Cases
Contour Based Use Cases
Supershapes:Shape Model for Contour Domains
Constraints Based Use Cases
Constraints Based Use Cases
Ellipsoid: Shape Model with Cutting Planes
Femur:Shape Model with Cutting Planes
Studio Femur: Shape Model from Meshes with Cutting Planes Using Studio
Multi-Step Optimization Use Cases
Multi-Step Optimization Use Cases
Fixed Domains Ellipsoid: Shape Model on New Shapes
Incremental Supershapes: Building a Shape Model Incrementally
Statistics Based Use Cases
Statistics Based Use Cases
Ellipsoid: Shape Statistics in Python
Femur: Group Difference Statistics in Python
Ellipsoid: Shape Evaluation in Python
Deep Learning Based Use Cases
Deep Learning Based Use Cases
Femur SSM Directly from Images
Shared Boundary Use Cases
Shared Boundary Use Cases
Peanut:Shape Model of Multiple Domains with Shared Boundaries
Right Ventricle: Highly Variable Shapes
For Developers
For Developers
Onboarding
How to Build ShapeWorks from Source?
How to Contribute to ShapeWorks?
How to Add ShapeWorks Commands?
How to Add Python APIs?
How to Add and Run Unit Tests?
How to Add New Use Cases?
How to Add New Notebooks?
Getting Started with Documentation
Getting Started with GitHub Actions
Getting Started with Markdown
Adding to PATH Environment Variable
Release Process
Python API Reference
C++ API Reference
C++ API Reference
ShapeWorks as a Library
Groups
Namespaces
Classes
Files
Java/Matlab Interface
Java/Matlab Interface
Java Interface
Matlab Interface
About
About
Meet ShapeWorkers!
Release Notes
License
Contact Us
Documentation/Doxygen
Updated on 2026-04-25 at 07:49:38 +0000