Libs/Optimize/ParticleSystem/itkParticleOmegaGradientFunction.h

Namespaces

Name
itk

Classes

	Name
class	itk::ParticleOmegaGradientFunction

Source code

#pragma once

#include "itkParticleEntropyGradientFunction.h"
#include "ParticleImageDomainWithGradients.h"
#include "ParticleImageDomainWithCurvature.h"
#include "itkParticleMeanCurvatureAttribute.h"
#include "itkCommand.h"

namespace itk
{

template <class TGradientNumericType, unsigned int VDimension>
class ParticleOmegaGradientFunction
  : public ParticleEntropyGradientFunction<TGradientNumericType, VDimension>
{
public:
  typedef ParticleOmegaGradientFunction Self;
  typedef SmartPointer<Self>  Pointer;
  typedef SmartPointer<const Self>  ConstPointer;
  typedef ParticleEntropyGradientFunction<TGradientNumericType, VDimension> Superclass;
  itkTypeMacro( ParticleOmegaGradientFunction, ParticleEntropyGradientFunction );

  typedef typename Superclass::GradientNumericType GradientNumericType;
  typedef typename Superclass::ParticleSystemType ParticleSystemType;
  typedef typename Superclass::VectorType VectorType;
  typedef typename Superclass::PointType PointType;
  typedef typename Superclass::GradientVectorType GradientVectorType;

  typedef ParticleMeanCurvatureAttribute<TGradientNumericType, VDimension>
    MeanCurvatureCacheType;

  typedef typename shapeworks::ParticleImageDomainWithCurvature<TGradientNumericType>::VnlMatrixType VnlMatrixType;

  itkNewMacro( Self );

  itkStaticConstMacro( Dimension, unsigned int, VDimension );

  inline virtual VectorType Evaluate( unsigned int a, unsigned int b, const ParticleSystemType* c,
                                      double& d ) const
  {
    double e;
    return this->Evaluate( a, b, c, d, e );
  }
  virtual VectorType Evaluate( unsigned int, unsigned int, const ParticleSystemType*,
                               double&, double & ) const;

  virtual void BeforeEvaluate( unsigned int, unsigned int, const ParticleSystemType* );

  inline virtual double Energy( unsigned int a, unsigned int b, const ParticleSystemType* c ) const
  {
    double d, e;
    this->Evaluate( a, b, c, d, e );
    return e;
  }

  inline double ComputeKappa( double mc, unsigned int d, double planeDist ) const
  {

    // NOTE: Should rethink this to scale nonlinearly with increasing distance
    // from the mean. This would be more consistent with the idea of
    // over/undersampling regions that are statistical outliers wrt curvature.
    // --jc


    //  double myKappa =  (1.0 + m_Rho * m_MeanCurvatureCache->operator[](
    //  this->GetDomainNumber())->operator[](idx) * (m_SamplesPerCurvature /
    //  twopi)) /
    //  ( m_SamplesPerCurvature * beta);
    double maxmc = m_MeanCurvatureCache->GetMeanCurvature( d )
                   + 2.0 * m_MeanCurvatureCache->GetCurvatureStandardDeviation( d );
    double minmc = m_MeanCurvatureCache->GetMeanCurvature( d )
                   - 2.0 * m_MeanCurvatureCache->GetCurvatureStandardDeviation( d );

    double kappa = 1.0 + m_Rho * ( mc - minmc ) / ( maxmc - minmc );

//    double MAG =  m_Rho;
//    double D   = 40;
//    if (fabs(planeDist) < D)
//      {
//      kappa = MAG + ((1.0 - MAG) / D) * fabs(planeDist);
//      }
//    else
//      {
//      kappa = 1.0;
//      }

    return kappa;
  }

  virtual void AfterIteration() {  }

  virtual void BeforeIteration()
  {
    //  this->ComputeKappaValues();
  }

  virtual double EstimateSigma( unsigned int, unsigned int,
                                const typename ParticleSystemType::PointVectorType &,
                                const std::vector<double> &,
                                const PointType &, double, double,
                                int &err, double &, unsigned int, unsigned int ) const;

  //  void ComputeKappaValues();

  void SetMeanCurvatureCache( MeanCurvatureCacheType* s )
  {    m_MeanCurvatureCache = s;  }
  MeanCurvatureCacheType* GetMeanCurvatureCache()
  {   return m_MeanCurvatureCache.GetPointer();  }
  const MeanCurvatureCacheType* GetMeanCurvatureCache() const
  {   return m_MeanCurvatureCache.GetPointer();  }

  //  void SetGamma(double g)
  //  { m_Gamma = g; }
  //  void SetBeta(double g)
  //  { m_Beta = g; }
//   void SetCurvatureScale(double g)
//   { m_CurvatureScale = g; }
//  void SetSamplesPerCurvature(double g)
//  { m_SamplesPerCurvature = g; }
  void SetRho(double g)
  { m_Rho= g; }
  //  double GetGamma() const
  //  { return m_Gamma; }
  //  double GetBeta() const
  //  { return m_Beta; }
//   double GetCurvatureScale() const
//   { return m_CurvatureScale; }
//  double GetSamplesPerCurvature() const
//  { return m_SamplesPerCurvature; }
  double GetRho() const
  { return m_Rho; }


  virtual typename ParticleVectorFunction<VDimension>::Pointer Clone()
  {
    typename ParticleOmegaGradientFunction<TGradientNumericType, VDimension>::Pointer copy = ParticleOmegaGradientFunction<TGradientNumericType, VDimension>::New();
    copy->SetParticleSystem(this->GetParticleSystem());
    copy->m_Counter = this->m_Counter;
    copy->m_Rho = this->m_Rho;
    copy->m_avgKappa = this->m_avgKappa;
    copy->m_CurrentSigma = this->m_CurrentSigma;
    copy->m_CurrentWeights = this->m_CurrentWeights;
    copy->m_CurrentNeighborhood = this->m_CurrentNeighborhood;

    copy->m_MinimumNeighborhoodRadius = this->m_MinimumNeighborhoodRadius;
    copy->m_MaximumNeighborhoodRadius = this->m_MaximumNeighborhoodRadius;
    copy->m_FlatCutoff = this->m_FlatCutoff;
    copy->m_NeighborhoodToSigmaRatio = this->m_NeighborhoodToSigmaRatio;

    copy->m_SpatialSigmaCache = this->m_SpatialSigmaCache;
    copy->m_MeanCurvatureCache = this->m_MeanCurvatureCache;

    copy->m_DomainNumber = this->m_DomainNumber;
    copy->m_ParticleSystem = this->m_ParticleSystem;
    copy->planePts = this->planePts;
    copy->spherePts = this->spherePts;
    copy->CToP = this->CToP;

    return (typename ParticleVectorFunction<VDimension>::Pointer)copy;
  }

protected:
  ParticleOmegaGradientFunction() :  m_Counter(0),
                                               m_Rho(1.0) {}
  virtual ~ParticleOmegaGradientFunction() {}
  void operator=(const ParticleOmegaGradientFunction &);
  ParticleOmegaGradientFunction(const ParticleOmegaGradientFunction &);
  typename MeanCurvatureCacheType::Pointer m_MeanCurvatureCache;
  //  double m_Gamma;
  //  double m_Beta;
  //  double m_CurvatureScale;
  //  double m_SamplesPerCurvature;
  unsigned int m_Counter;
  double m_Rho;
  double m_avgKappa;

  double m_CurrentSigma;
  typename ParticleSystemType::PointVectorType m_CurrentNeighborhood;

  std::vector<double> m_CurrentWeights;

  std::vector < itk::Point<double, VDimension> > planePts;
  std::vector < itk::Point<double, VDimension> > spherePts;
  std::vector < double > CToP; // distance from sphere center to pos

  // SHIREEN
  float m_MaxMoveFactor;
  // end SHIREEN
};

} //end namespace


#include "itkParticleOmegaGradientFunction.txx"

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Updated on 2022-07-23 at 17:50:04 -0600